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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
25.5
nTPM
Monaco:
49.2
nTPM
Schmiedel:
10.8
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
25.5
HPA sample
nTPM
gdT-cell nTPM: 25.5
Samples: 6
Max nTPM: 37.3
Min nTPM: 16.5
P10809_1007
21.7
P10809_1022
30.5
P10809_1041
18.2
P10809_1060
16.5
P10809_1077
28.6
P10809_1098
37.3
MAIT T-cell nTPM: 21.8
Samples: 6
Max nTPM: 26.4
Min nTPM: 15.5
P10809_1006
18.7
P10809_1024
25.9
P10809_1043
15.5
P10809_1062
17.9
P10809_1083
26.1
P10809_1097
26.4
Memory CD4 T-cell nTPM: 10.9
Samples: 6
Max nTPM: 16.5
Min nTPM: 9.3
P10809_1014
9.8
P10809_1026
9.3
P10809_1045
10.5
P10809_1064
9.9
P10809_1086
16.5
P10809_1113
9.5
Memory CD8 T-cell nTPM: 12.3
Samples: 5
Max nTPM: 14.8
Min nTPM: 9.4
P10809_1012
13.4
P10809_1027
9.4
P10809_1046
14.8
P10809_1065
12.7
P10809_1111
11.1
Naive CD4 T-cell nTPM: 12.4
Samples: 6
Max nTPM: 19.0
Min nTPM: 9.1
P10809_1015
12.2
P10809_1030
9.1
P10809_1049
10.8
P10809_1068
11.4
P10809_1085
19.0
P10809_1112
12.0
Naive CD8 T-cell nTPM: 13.6
Samples: 6
Max nTPM: 23.1
Min nTPM: 7.7
P10809_1016
12.9
P10809_1031
15.8
P10809_1050
7.7
P10809_1069
10.3
P10809_1087
23.1
P10809_1110
11.9
T-reg nTPM: 1.6
Samples: 6
Max nTPM: 3.0
Min nTPM: 0.1
P10809_1018
3.0
P10809_1037
0.1
P10809_1056
0.2
P10809_1075
1.6
P10809_1094
2.0
P10809_1106
2.7
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
49.2
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 15.8
Samples: 4
Max nTPM: 21.9
Min nTPM: 12.0
RHH5202_R3573
21.9
RHH5230_R3602
14.0
RHH5259_R3631
15.3
RHH5288_R3660
12.0
Effector memory CD8 T-cell nTPM: 19.9
Samples: 4
Max nTPM: 23.3
Min nTPM: 14.3
RHH5203_R3574
14.3
RHH5231_R3603
21.3
RHH5260_R3632
20.8
RHH5289_R3661
23.3
MAIT T-cell nTPM: 21.1
Samples: 4
Max nTPM: 27.3
Min nTPM: 15.9
RHH5233_R3605
23.3
RHH5205_R3576
15.9
RHH5262_R3634
17.7
RHH5297_R3663
27.3
Memory CD4 T-cell TFH nTPM: 13.7
Samples: 4
Max nTPM: 25.2
Min nTPM: 8.1
RHH5300_R3666
12.6
RHH5236_R3608
25.2
RHH5265_R3637
8.1
RHH5208_R3579
9.0
Memory CD4 T-cell Th1 nTPM: 11.2
Samples: 4
Max nTPM: 17.3
Min nTPM: 8.5
RHH5210_R3581
8.5
RHH5302_R3668
9.5
RHH5238_R3610
17.3
RHH5267_R3639
9.4
Memory CD4 T-cell Th1/Th17 nTPM: 14.4
Samples: 4
Max nTPM: 20.1
Min nTPM: 10.2
RHH5303_R3669
13.2
RHH5211_R3582
14.1
RHH5239_R3611
10.2
RHH5268_R3640
20.1
Memory CD4 T-cell Th17 nTPM: 10.8
Samples: 4
Max nTPM: 14.8
Min nTPM: 5.7
RHH5304_R3670
10.6
RHH5212_R3583
14.8
RHH5240_R3612
5.7
RHH5269_R3641
12.1
Memory CD4 T-cell Th2 nTPM: 15.7
Samples: 4
Max nTPM: 19.0
Min nTPM: 11.6
RHH5305_R3671
11.6
RHH5213_R3584
19.0
RHH5241_R3613
18.2
RHH5270_R3642
13.9
Naive CD4 T-cell nTPM: 18.6
Samples: 4
Max nTPM: 23.6
Min nTPM: 16.5
RHH5306_R3672
16.5
RHH5214_R3585
17.5
RHH5242_R3614
23.6
RHH5271_R3643
16.8
Naive CD8 T-cell nTPM: 20.6
Samples: 4
Max nTPM: 27.0
Min nTPM: 14.9
RHH5201_R3572
14.9
RHH5229_R3601
19.8
RHH5258_R3630
27.0
RHH5287_R3659
20.5
Non-Vd2 gdTCR nTPM: 35.0
Samples: 4
Max nTPM: 49.4
Min nTPM: 17.0
RHH5235_R3607
49.4
RHH5264_R3636
30.9
RHH5207_R3578
42.8
RHH5299_R3665
17.0
T-reg nTPM: 10.7
Samples: 4
Max nTPM: 15.5
Min nTPM: 7.8
RHH5301_R3667
8.9
RHH5237_R3609
7.8
RHH5266_R3638
10.6
RHH5209_R3580
15.5
Terminal effector memory CD4 T-cell nTPM: 49.2
Samples: 2
Max nTPM: 74.9
Min nTPM: 23.5
RHH5243_R3615
74.9
RHH5272_R3644
23.5
Terminal effector memory CD8 T-cell nTPM: 32.6
Samples: 4
Max nTPM: 35.3
Min nTPM: 29.5
RHH5232_R3604
29.5
RHH5204_R3575
32.7
RHH5261_R3633
35.3
RHH5296_R3662
32.8
Vd2 gdTCR nTPM: 29.1
Samples: 4
Max nTPM: 33.5
Min nTPM: 22.9
RHH5234_R3606
32.4
RHH5206_R3577
33.5
RHH5263_R3635
27.6
RHH5298_R3664
22.9
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
