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THBS4
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                                  BRAIN MEDULLA OBLONGATA Show tissue menu
                                  AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
                                  MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
                                  ANTIBODIES
                                  AND
                                  VALIDATION
                                  Brain proteome
                                  Medulla oblongata
                                  MEDULLA OBLONGATA - Expression summary
                                  Protein expressioni

                                  On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

                                  Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

                                  If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

                                  No data
                                  RNA expressioni

                                  A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

                                  The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

                                  Scroll down to view mRNA expression data in more detail.
                                  HPA Brain:40.7 nTPM
                                  FANTOM5:22.8 Scaled Tags Per Million
                                  Pig:3.7 nTPM
                                  Allen mouse:0.0 Expression energy

                                  MEDULLA OBLONGATA - HPA Brain RNA-seq
                                  Max nTPM 40.7
                                  Sample id Sample description nTPM
                                  Area postrema
                                  nTPM: 36.0
                                  2306 Male, age 80, both hemispheres 42.4
                                  2054 Male, age 76, both hemispheres 33.9
                                  2799 Male, age 61, both hemispheres 31.7
                                  Dorsal medullary reticular nucleus
                                  nTPM: 33.5
                                  2373 Male, age 61, both hemispheres 35.7
                                  2088 Male, age 76, both hemispheres 32.4
                                  2040 Female, age 85, both hemispheres 32.3
                                  Dorsal motor vagal complex
                                  nTPM: 35.9
                                  2000 Male, age 74, unknown 43.0
                                  2813 Female, age 72, unknown 42.9
                                  2844 Male, age 55, unknown 40.9
                                  2797 Male, age 61, both hemispheres 37.3
                                  2185 Male, age 76, both hemispheres 36.8
                                  2133 Female, age 91, both hemispheres 33.1
                                  2643 Male, age 74, both hemispheres 31.5
                                  2807 Female, age 85, both hemispheres 21.4
                                  Gigantocellular reticular nuclei, medullary
                                  nTPM: 29.1
                                  2314 Male, age 61, both hemispheres 40.9
                                  2022 Male, age 76, right hemisphere 32.5
                                  1876 Female, age 85, both hemispheres 30.7
                                  2387 Female, age 91, both hemispheres 27.4
                                  2310 Male, age 80, both hemispheres 22.7
                                  2462 Male, age 74, both hemispheres 20.6
                                  Gigantocellular reticular nuclei, pars
                                  nTPM: 27.0
                                  2084 Female, age 85, both hemispheres 37.0
                                  2336 Male, age 61, both hemispheres 27.8
                                  2706 Male, age 80, both hemispheres 24.1
                                  2330 Male, age 80, both hemispheres 23.4
                                  2168 Male, age 76, both hemispheres 22.9
                                  Inferior olive
                                  nTPM: 38.0
                                  2085 Female, age 85, both hemispheres 44.1
                                  2178 Male, age 61, both hemispheres 43.5
                                  2563 Male, age 74, both hemispheres 38.0
                                  2379 Male, age 80, both hemispheres 33.5
                                  2628 Female, age 91, both hemispheres 30.7
                                  Lateral medullary reticular nucleus
                                  nTPM: 34.6
                                  2852 Male, age 80, both hemispheres 45.8
                                  2374 Male, age 61, both hemispheres 37.0
                                  2804 Female, age 91, both hemispheres 36.0
                                  2044 Male, age 76, both hemispheres 31.6
                                  2190 Female, age 85, both hemispheres 31.0
                                  2305 Male, age 74, both hemispheres 26.3
                                  Medial olivary nucleus
                                  nTPM: 29.4
                                  2138 Female, age 91, both hemispheres 36.4
                                  2851 Male, age 80, both hemispheres 28.1
                                  1962 Male, age 76, both hemispheres 27.6
                                  1943 Male, age 61, both hemispheres 25.3
                                  Medial vestibular nucleus
                                  nTPM: 31.7
                                  2093 Male, age 80, both hemispheres 40.4
                                  2803 Female, age 91, both hemispheres 33.2
                                  2624 Male, age 61, both hemispheres 31.2
                                  2134 Male, age 76, both hemispheres 30.6
                                  2743 Female, age 85, both hemispheres 27.6
                                  2801 Male, age 74, both hemispheres 27.3
                                  Motor hypoglossal nucleus
                                  nTPM: 35.4
                                  2277 Male, age 76, both hemispheres 41.4
                                  2461 Male, age 61, both hemispheres 40.4
                                  2125 Female, age 91, both hemispheres 35.5
                                  2132 Female, age 85, both hemispheres 30.4
                                  2182 Male, age 80, both hemispheres 29.5
                                  Nucleus ambiguus
                                  nTPM: 40.7
                                  2071 Male, age 76, both hemispheres 47.8
                                  2096 Female, age 85, both hemispheres 33.6
                                  Nucleus cuneatus
                                  nTPM: 25.4
                                  2562 Male, age 61, both hemispheres 31.4
                                  2380 Male, age 80, both hemispheres 29.9
                                  2381 Male, age 80, both hemispheres 28.0
                                  2805 Female, age 91, both hemispheres 25.5
                                  2564 Male, age 74, both hemispheres 24.4
                                  2100 Male, age 76, both hemispheres 23.3
                                  2808 Female, age 85, both hemispheres 22.4
                                  2376 Male, age 61, both hemispheres 22.2
                                  2131 Male, age 76, both hemispheres 21.5
                                  Nucleus gracilis
                                  nTPM: 28.4
                                  2382 Male, age 80, both hemispheres 36.1
                                  2627 Male, age 74, both hemispheres 27.5
                                  2299 Female, age 85, both hemispheres 21.8
                                  Nucleus raphe obscurus
                                  nTPM: 33.6
                                  2142 Male, age 76, midline 43.5
                                  2800 Male, age 61, midline 32.7
                                  2845 Female, age 85, midline 24.5
                                  Nucleus raphe pallidus
                                  nTPM: 26.2
                                  2183 Male, age 80, midline 29.1
                                  2145 Male, age 76, midline 28.0
                                  1924 Male, age 61, midline 21.5
                                  Nucleus tractus solitarii
                                  nTPM: 31.5
                                  2656 Male, age 76, both hemispheres 42.3
                                  2144 Female, age 91, right hemisphere 29.4
                                  2307 Male, age 80, both hemispheres 27.8
                                  2191 Female, age 85, both hemispheres 26.7
                                  Parvicellular reticular nuclei
                                  nTPM: 26.5
                                  2119 Male, age 80, both hemispheres 32.8
                                  2095 Male, age 76, both hemispheres 29.9
                                  2558 Male, age 74, both hemispheres 16.9
                                  Parvicellular reticular nuclei, medullary
                                  nTPM: 30.5
                                  2181 Male, age 80, left hemisphere 33.3
                                  2091 Female, age 85, both hemispheres 29.2
                                  2189 Female, age 91, both hemispheres 28.9
                                  Peritrigeminal nucleus
                                  nTPM: 32.2
                                  2067 Female, age 85, both hemispheres 34.0
                                  2136 Male, age 76, both hemispheres 32.9
                                  2179 Male, age 61, both hemispheres 29.8
                                  Prepositus hypoglossal nucleus
                                  nTPM: 27.4
                                  2086 Male, age 80, both hemispheres 32.4
                                  2855 Female, age 85, right hemisphere 22.5
                                  Spinal trigeminal nucleus, caudal
                                  nTPM: 28.5
                                  2308 Male, age 80, both hemispheres 31.0
                                  2390 Female, age 91, both hemispheres 30.7
                                  2642 Male, age 74, both hemispheres 29.4
                                  2312 Male, age 61, both hemispheres 26.6
                                  2447 Male, age 76, both hemispheres 24.7
                                  Spinal trigeminal nucleus, interpolar
                                  nTPM: 29.8
                                  2625 Male, age 61, both hemispheres 39.3
                                  2033 Male, age 80, both hemispheres 30.5
                                  2386 Female, age 85, both hemispheres 28.3
                                  2066 Male, age 76, right hemisphere 25.7
                                  2389 Female, age 91, both hemispheres 25.0
                                  Spinal vestibular nucleus
                                  nTPM: 34.9
                                  2186 Female, age 91, both hemispheres 40.7
                                  2748 Male, age 76, both hemispheres 39.5
                                  2780 Male, age 80, both hemispheres 36.1
                                  2796 Male, age 61, both hemispheres 34.1
                                  2384 Male, age 74, both hemispheres 30.1
                                  2806 Female, age 85, both hemispheres 29.2
                                  Superior vestibular nucleus
                                  nTPM: 30.3
                                  2015 Male, age 80, both hemispheres 34.2
                                  2061 Male, age 76, both hemispheres 30.1
                                  2383 Male, age 74, both hemispheres 26.7
                                  Ventral medullary reticular nucleus
                                  nTPM: 38.1
                                  2060 Male, age 76, both hemispheres 38.7
                                  2372 Male, age 61, both hemispheres 37.5
                                  Ventrolateral medulla, A1-C1 cell groups
                                  nTPM: 30.7
                                  2118 Male, age 80, both hemispheres 32.0
                                  1986 Male, age 76, both hemispheres 31.8
                                  2302 Female, age 91, both hemispheres 31.4
                                  2180 Male, age 61, both hemispheres 30.2
                                  2741 Female, age 85, both hemispheres 28.2

                                  MEDULLA OBLONGATA - FANTOM5 CAGEi

                                  RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

                                  Max Scaled Tags Per Million 22.8
                                  FANTOM5 sample id Sample description Scaled Tags Per Million
                                  Medulla oblongata
                                  Scaled Tags Per Million: 22.8
                                  FF:10038-101F2 18-64 years, mixed 32.4
                                  FF:10174-103C3 60 years, female 19.3
                                  FF:10155-103A2 76 years, female 16.7

                                  MEDULLA OBLONGATA - Pig RNA-seqi

                                  RNA-seq data obtained from pig brain is reported as nTPM .

                                  Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
                                  Average nTPM 3.7
                                  Pig sample Sample description nTPM
                                  2.83.64.42.05.50.00.51.01.52.02.53.03.54.04.55.05.5
                                  2.83.64.42.05.50.00.51.01.52.02.53.03.54.04.55.05.5
                                  Medulla oblongata
                                  nTPM: 3.7
                                  Samples: 4

                                  Max nTPM: 5.5
                                  Min nTPM: 2.0
                                  Sample A Female 4.1
                                  Sample B Female 2.0
                                  Sample C Male 3.1
                                  Sample D Male 5.5

                                  MEDULLA OBLONGATA - Allen Mouse ISHi

                                  In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

                                  Max Expression energy 0.0
                                  Allen experiment id Experiment description Expression energy
                                  Medulla oblongata
                                  Expression energy: 0.0
                                  112651416 Antisense, RP_110407_03_C05, Mouse strain C57BL/6J (56 days, male) 0.1
                                  77800901 Antisense, RP_070212_03_C07, Mouse strain C57BL/6J (56 days, male) 0.0
                                  77874596 Antisense, RP_070212_03_C07, Mouse strain C57BL/6J (56 days, male) 0.0
                                  100144088 Antisense, RP_110407_03_C05, Mouse strain C57BL/6J (56 days, male) 0.0

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