MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.1 nTPM
HPA Brain:41.1 nTPM
GTEx:28.1 nTPM
FANTOM5:58.6 Scaled Tags Per Million
Pig:46.0 nTPM
Mouse:72.6 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 41.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.4
2019 Male, age 18, unknown 43.7
2586 Male, age 75, left hemisphere 43.0
2666 Male, age 74, left hemisphere 42.5
1870 Female, age 42, unknown 40.0
2411 Female, age 72, unknown 38.2
1833 Male, age 53, unknown 37.7
1830 Male, age 51, unknown 37.4
1827 Male, age 72, unknown 36.0
2828 Female, age 72, unknown 34.3
2219 Male, age 76, both hemispheres 31.0
Dorsal raphe nucleus
nTPM: 38.8
2750 Male, age 76, both hemispheres 40.6
1828 Male, age 53, unknown 39.5
2016 Female, age 72, unknown 39.2
2047 Male, age 72, unknown 38.4
2298 Female, age 72, unknown 36.4
Inferior colliculus
nTPM: 37.2
1890 Male, age 53, unknown 38.7
1848 Female, age 42, unknown 38.0
2097 Female, age 72, unknown 37.7
2849 Male, age 72, unknown 34.5
Median raphe nucleus
nTPM: 41.1
2220 Male, age 76, midline 41.1
Periaquaductal grey, anterior
nTPM: 39.0
1947 Male, age 18, unknown 41.2
2502 Female, age 75, unknown 40.1
1795 Male, age 51, unknown 35.7
Periaquaductal grey, dorsal
nTPM: 37.3
2850 Male, age 76, both hemispheres 43.7
1840 Male, age 53, unknown 35.4
2464 Female, age 72, unknown 35.2
1831 Male, age 72, unknown 34.8
Periaquaductal grey, lateral
nTPM: 36.9
2140 Male, age 76, both hemispheres 39.4
2272 Male, age 74, both hemispheres 36.4
2053 Male, age 18, unknown 34.9
Pretectal area
nTPM: 38.4
1817 Female, age 42, unknown 42.9
2007 Male, age 72, unknown 42.1
1815 Male, age 53, unknown 41.1
1816 Male, age 51, unknown 39.5
1944 Female, age 72, unknown 39.0
2273 Male, age 74, both hemispheres 38.5
2316 Male, age 76, right hemisphere 36.8
2667 Female, age 75, unknown 36.7
2224 Female, age 72, unknown 35.2
2825 Male, age 18, unknown 35.2
2407 Male, age 75, both hemispheres 35.1
Red nucleus
nTPM: 39.3
1821 Female, age 72, unknown 44.8
1954 Female, age 42, unknown 42.5
2785 Male, age 18, unknown 42.0
1865 Male, age 51, unknown 41.5
1904 Male, age 53, unknown 41.3
2769 Male, age 72, unknown 38.3
2227 Male, age 72, unknown 38.2
2823 Male, age 76, right hemisphere 37.2
2503 Female, age 72, unknown 37.0
2725 Female, age 75, unknown 36.7
2584 Male, age 75, left hemisphere 36.3
2588 Male, age 74, left hemisphere 36.1
Substantia nigra
nTPM: 39.7
2241 Male, age 72, unknown 44.2
2583 Male, age 75, right hemisphere 41.2
1916 Female, age 42, unknown 41.1
1889 Female, age 72, unknown 40.7
1851 Male, age 51, unknown 40.5
1941 Male, age 53, unknown 39.5
2665 Male, age 74, both hemispheres 38.9
2590 Female, age 75, unknown 38.8
2409 Female, age 72, unknown 38.7
2699 Male, age 18, unknown 33.7
Superior colliculus
nTPM: 37.4
2668 Female, age 75, unknown 41.3
1995 Male, age 72, unknown 39.4
2261 Male, age 18, unknown 38.9
2587 Male, age 74, left hemisphere 37.9
1913 Female, age 42, unknown 37.8
2664 Male, age 75, both hemispheres 36.7
1839 Male, age 51, unknown 36.4
1895 Male, age 76, right hemisphere 36.1
2087 Female, age 72, unknown 35.4
1796 Male, age 53, unknown 33.8
Ventral tegmental area
nTPM: 38.2
2410 Female, age 72, unknown 39.8
1942 Male, age 51, unknown 39.0
2218 Male, age 76, both hemispheres 38.9
2223 Female, age 72, unknown 37.6
2021 Male, age 53, unknown 37.5
1915 Female, age 42, unknown 36.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.1
Samples: 139

Max nTPM: 41.6
Min nTPM: 19.1
Std nTPM: 4.5
Median nTPM: 27.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 41.6
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 38.2
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 37.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 37.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 36.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 36.1
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 36.1
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 36.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 35.9
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 35.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 35.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 58.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 58.6
FF:10158-103A5 76 years, female 58.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 46.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 39.0
Samples: 4

Max nTPM: 44.0
Min nTPM: 36.8
Sample A Female 44.0
Sample B Female 38.3
Sample C Male 36.9
Sample D Male 36.8
Midbrain
nTPM: 43.2
Samples: 4

Max nTPM: 50.4
Min nTPM: 37.5
Sample A Female 50.4
Sample B Female 38.2
Sample C Male 46.5
Sample D Male 37.5
Periaqueductal gray
nTPM: 38.1
Samples: 3

Max nTPM: 39.7
Min nTPM: 35.8
Sample B Female 38.8
Sample C Male 39.7
Sample D Male 35.8
Superior colliculi
nTPM: 46.0
Samples: 4

Max nTPM: 49.1
Min nTPM: 39.8
Sample A Female 49.1
Sample B Female 47.7
Sample C Male 47.3
Sample D Male 39.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 72.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 72.6
Samples: 4

Max nTPM: 77.6
Min nTPM: 66.3
Sample A Male 66.3
Sample B Male 73.5
Sample C Female 77.6
Sample D Female 73.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
69013483 Antisense, RP_050309_02_E01, Mouse strain C57BL/6J (56 days, male) 0.8
70794037 Antisense, RP_050712_01_C04, Mouse strain C57BL/6J (56 days, male) 0.2

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