MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:50.0 nTPM
HPA Brain:44.7 nTPM
GTEx:50.0 nTPM
FANTOM5:57.1 Scaled Tags Per Million
Pig:108.8 nTPM
Mouse:54.4 nTPM
Allen mouse:2.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 44.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.0
1827 Male, age 72, unknown 39.0
2828 Female, age 72, unknown 34.7
2411 Female, age 72, unknown 33.5
1870 Female, age 42, unknown 32.6
2219 Male, age 76, both hemispheres 32.5
2666 Male, age 74, left hemisphere 32.3
1833 Male, age 53, unknown 31.9
2586 Male, age 75, left hemisphere 28.2
1830 Male, age 51, unknown 27.5
2019 Male, age 18, unknown 27.5
Dorsal raphe nucleus
nTPM: 39.5
2298 Female, age 72, unknown 51.3
2047 Male, age 72, unknown 38.8
1828 Male, age 53, unknown 36.5
2016 Female, age 72, unknown 35.7
2750 Male, age 76, both hemispheres 35.2
Inferior colliculus
nTPM: 35.3
2097 Female, age 72, unknown 45.4
1848 Female, age 42, unknown 34.0
1890 Male, age 53, unknown 31.0
2849 Male, age 72, unknown 30.9
Median raphe nucleus
nTPM: 44.7
2220 Male, age 76, midline 44.7
Periaquaductal grey, anterior
nTPM: 39.6
1947 Male, age 18, unknown 43.0
1795 Male, age 51, unknown 38.1
2502 Female, age 75, unknown 37.5
Periaquaductal grey, dorsal
nTPM: 32.7
1840 Male, age 53, unknown 35.8
1831 Male, age 72, unknown 33.2
2464 Female, age 72, unknown 31.7
2850 Male, age 76, both hemispheres 29.9
Periaquaductal grey, lateral
nTPM: 34.2
2272 Male, age 74, both hemispheres 41.5
2053 Male, age 18, unknown 33.3
2140 Male, age 76, both hemispheres 27.7
Pretectal area
nTPM: 35.8
2224 Female, age 72, unknown 44.4
2273 Male, age 74, both hemispheres 42.5
1816 Male, age 51, unknown 36.6
1944 Female, age 72, unknown 36.4
2825 Male, age 18, unknown 36.3
1817 Female, age 42, unknown 35.2
1815 Male, age 53, unknown 34.6
2007 Male, age 72, unknown 34.3
2667 Female, age 75, unknown 33.2
2407 Male, age 75, both hemispheres 30.3
2316 Male, age 76, right hemisphere 30.1
Red nucleus
nTPM: 28.6
2725 Female, age 75, unknown 37.2
1821 Female, age 72, unknown 35.7
1954 Female, age 42, unknown 31.8
2227 Male, age 72, unknown 27.9
2588 Male, age 74, left hemisphere 27.8
1904 Male, age 53, unknown 27.6
2584 Male, age 75, left hemisphere 27.6
2503 Female, age 72, unknown 27.0
1865 Male, age 51, unknown 26.1
2769 Male, age 72, unknown 26.0
2785 Male, age 18, unknown 25.4
2823 Male, age 76, right hemisphere 23.5
Substantia nigra
nTPM: 39.3
1916 Female, age 42, unknown 58.4
2241 Male, age 72, unknown 47.9
1851 Male, age 51, unknown 44.8
2699 Male, age 18, unknown 43.1
1941 Male, age 53, unknown 39.5
1889 Female, age 72, unknown 37.3
2665 Male, age 74, both hemispheres 31.8
2409 Female, age 72, unknown 31.3
2590 Female, age 75, unknown 31.0
2583 Male, age 75, right hemisphere 28.1
Superior colliculus
nTPM: 31.9
1796 Male, age 53, unknown 38.7
2087 Female, age 72, unknown 34.1
1839 Male, age 51, unknown 33.9
2668 Female, age 75, unknown 33.9
2261 Male, age 18, unknown 33.2
2587 Male, age 74, left hemisphere 33.0
2664 Male, age 75, both hemispheres 29.4
1895 Male, age 76, right hemisphere 28.4
1913 Female, age 42, unknown 28.1
1995 Male, age 72, unknown 26.7
Ventral tegmental area
nTPM: 39.2
1915 Female, age 42, unknown 47.6
2218 Male, age 76, both hemispheres 41.5
1942 Male, age 51, unknown 39.5
2410 Female, age 72, unknown 38.7
2021 Male, age 53, unknown 35.8
2223 Female, age 72, unknown 32.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 50.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 50.0
Samples: 139

Max nTPM: 82.1
Min nTPM: 25.4
Std nTPM: 12.8
Median nTPM: 48.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 82.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 81.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 80.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 76.6
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 76.3
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 74.9
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 74.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 73.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 71.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 70.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 70.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 57.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 57.1
FF:10158-103A5 76 years, female 57.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 108.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 89.8
Samples: 4

Max nTPM: 100.1
Min nTPM: 79.5
Sample A Female 98.7
Sample B Female 79.5
Sample C Male 100.1
Sample D Male 80.8
Midbrain
nTPM: 104.2
Samples: 4

Max nTPM: 136.0
Min nTPM: 91.8
Sample A Female 94.4
Sample B Female 94.7
Sample C Male 136.0
Sample D Male 91.8
Periaqueductal gray
nTPM: 96.1
Samples: 3

Max nTPM: 110.0
Min nTPM: 85.2
Sample B Female 93.1
Sample C Male 110.0
Sample D Male 85.2
Superior colliculi
nTPM: 108.8
Samples: 4

Max nTPM: 138.2
Min nTPM: 93.1
Sample A Female 106.3
Sample B Female 93.1
Sample C Male 138.2
Sample D Male 97.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 54.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 54.4
Samples: 4

Max nTPM: 56.9
Min nTPM: 51.8
Sample A Male 51.8
Sample B Male 52.3
Sample C Female 56.5
Sample D Female 56.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.7
68269502 Antisense, RP_041129_01_F11, Mouse strain C57BL/6J (56 days, male) 2.7

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