BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:138.6 nTPM
HPA Brain:66.8 nTPM
GTEx:138.6 nTPM
FANTOM5:143.3 Scaled Tags Per Million
Pig:35.2 nTPM
Mouse:73.1 nTPM
Allen mouse:0.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 66.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 59.8
2481 Female, age 94, left hemisphere 89.6
2290 Female, age 72, unknown 61.9
1857 Female, age 85, left hemisphere 61.5
2288 Male, age 75, left hemisphere 58.1
1854 Male, age 80, left hemisphere 56.7
2846 Female, age 79, unknown 54.8
2289 Male, age 61, right hemisphere 52.4
1781 Male, age 74, unknown 43.7
Globus pallidus, externus
nTPM: 64.2
1996 Male, age 80, right hemisphere 84.7
2772 Female, age 79, unknown 72.7
2395 Male, age 75, both hemispheres 70.9
2646 Male, age 61, right hemisphere 52.9
2567 Female, age 72, unknown 39.7
Globus pallidus, internus
nTPM: 66.8
2037 Male, age 80, right hemisphere 87.6
1818 Male, age 74, unknown 72.7
2483 Female, age 94, right hemisphere 69.6
2778 Female, age 91, both hemispheres 68.5
2111 Female, age 85, right hemisphere 65.4
2287 Male, age 75, right hemisphere 59.5
2566 Female, age 72, unknown 44.3
Nucleus accumbens
nTPM: 54.5
2391 Female, age 94, left hemisphere 71.9
2286 Male, age 75, left hemisphere 67.4
2698 Female, age 72, unknown 59.2
1806 Female, age 85, left hemisphere 58.1
2732 Male, age 80, right hemisphere 51.5
1856 Female, age 91, right hemisphere 46.3
1783 Male, age 74, unknown 45.5
2824 Male, age 61, right hemisphere 36.1
Nucleus basalis of Meynert
nTPM: 55.3
2821 Male, age 75, both hemispheres 58.5
2569 Male, age 61, both hemispheres 56.3
2393 Male, age 80, right hemisphere 53.7
2484 Female, age 94, left hemisphere 52.9
Nucleus of the diagonal band
nTPM: 37.4
1812 Female, age 91, both hemispheres 50.2
1979 Male, age 74, unknown 38.7
2195 Female, age 85, both hemispheres 35.3
2775 Male, age 80, right hemisphere 33.6
2029 Male, age 61, right hemisphere 29.2
Putamen
nTPM: 49.8
2482 Female, age 94, left hemisphere 77.3
2489 Female, age 72, unknown 49.4
1937 Female, age 91, right hemisphere 48.5
2466 Female, age 79, unknown 46.9
1829 Male, age 74, unknown 43.7
2647 Male, age 75, left hemisphere 41.7
1838 Male, age 80, right hemisphere 41.0
Septal nuclei
nTPM: 41.7
2199 Male, age 80, right hemisphere 55.6
2394 Male, age 61, left hemisphere 45.4
2009 Female, age 91, both hemispheres 41.2
2059 Female, age 85, both hemispheres 40.4
2629 Female, age 94, right hemisphere 39.9
2031 Female, age 72, unknown 39.8
1960 Male, age 74, unknown 29.3
Stria terminalis, bed nucleus
nTPM: 36.4
2201 Male, age 74, unknown 40.5
2486 Female, age 94, both hemispheres 34.4
1974 Female, age 91, both hemispheres 34.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 138.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 127.4
Samples: 246

Max nTPM: 293.6
Min nTPM: 30.0
Std nTPM: 41.2
Median nTPM: 122.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 293.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 252.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 251.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 230.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 227.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 210.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 210.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 209.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 209.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 208.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 205.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 111.8
Samples: 246

Max nTPM: 340.5
Min nTPM: 51.5
Std nTPM: 42.8
Median nTPM: 101.4
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 340.5
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 308.2
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 238.1
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 235.8
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 229.1
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 217.9
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 207.4
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 204.7
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 203.7
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 202.0
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 196.7
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Brain - Putamen (basal ganglia)
Average nTPM: 138.6
Samples: 205

Max nTPM: 300.7
Min nTPM: 51.6
Std nTPM: 47.2
Median nTPM: 130.4
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 300.7
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 269.8
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 269.3
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 269.2
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 255.3
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 252.3
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 244.7
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 242.2
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 236.4
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 235.7
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 234.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 143.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 103.1
FF:10164-103B2 76 years, female 103.1
Nucleus accumbens
Scaled Tags Per Million: 82.4
FF:10037-101F1 23-56 years, mixed 82.4
Putamen
Scaled Tags Per Million: 75.0
FF:10176-103C5 60 years, female 75.0
Globus pallidus
Scaled Tags Per Million: 143.3
FF:10175-103C4 60 years, female 176.5
FF:10161-103A8 76 years, female 110.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 35.2
Pig sample Sample description nTPM
Caudate
nTPM: 24.7
Samples: 4

Max nTPM: 26.5
Min nTPM: 21.3
Sample A Female 25.7
Sample B Female 26.5
Sample C Male 25.1
Sample D Male 21.3
Putamen
nTPM: 30.7
Samples: 4

Max nTPM: 41.5
Min nTPM: 25.6
Sample A Female 41.5
Sample B Female 25.6
Sample C Male 27.5
Sample D Male 28.0
Septum
nTPM: 35.2
Samples: 4

Max nTPM: 41.1
Min nTPM: 31.0
Sample A Female 37.0
Sample B Female 31.6
Sample C Male 41.1
Sample D Male 31.0
Ventral pallidum
nTPM: 28.4
Samples: 4

Max nTPM: 32.2
Min nTPM: 23.3
Sample A Female 23.3
Sample B Female 32.2
Sample C Male 26.3
Sample D Male 31.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 73.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 69.4
Samples: 4

Max nTPM: 78.6
Min nTPM: 65.8
Sample A Male 66.5
Sample B Male 65.8
Sample C Female 66.6
Sample D Female 78.6
Septum
nTPM: 73.1
Samples: 4

Max nTPM: 93.5
Min nTPM: 55.9
Sample A Male 55.9
Sample B Male 69.9
Sample C Female 93.5
Sample D Female 73.1
Ventral forebrain
nTPM: 58.4
Samples: 4

Max nTPM: 78.7
Min nTPM: 46.1
Sample A Male 46.1
Sample B Male 54.6
Sample C Female 78.7
Sample D Female 54.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
68196930 Antisense, RP_041116_01_F09, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.0
68196930 Antisense, RP_041116_01_F09, Mouse strain C57BL/6J (56 days, male) 0.0

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