MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.4 nTPM
HPA Brain:92.7 nTPM
GTEx:20.4 nTPM
FANTOM5:95.4 Scaled Tags Per Million
Pig:19.6 nTPM
Mouse:12.9 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 92.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 75.5
1830 Male, age 51, unknown 90.5
2411 Female, age 72, unknown 88.8
1833 Male, age 53, unknown 86.2
2019 Male, age 18, unknown 84.5
1870 Female, age 42, unknown 77.5
2828 Female, age 72, unknown 75.6
2586 Male, age 75, left hemisphere 69.1
2666 Male, age 74, left hemisphere 66.3
2219 Male, age 76, both hemispheres 59.7
1827 Male, age 72, unknown 57.2
Dorsal raphe nucleus
nTPM: 55.7
2750 Male, age 76, both hemispheres 75.8
2016 Female, age 72, unknown 63.6
1828 Male, age 53, unknown 60.2
2298 Female, age 72, unknown 41.9
2047 Male, age 72, unknown 36.7
Inferior colliculus
nTPM: 53.8
1890 Male, age 53, unknown 61.4
2849 Male, age 72, unknown 56.3
1848 Female, age 42, unknown 52.9
2097 Female, age 72, unknown 44.7
Median raphe nucleus
nTPM: 40.2
2220 Male, age 76, midline 40.2
Periaquaductal grey, anterior
nTPM: 55.3
1947 Male, age 18, unknown 59.1
2502 Female, age 75, unknown 56.8
1795 Male, age 51, unknown 50.1
Periaquaductal grey, dorsal
nTPM: 41.9
2464 Female, age 72, unknown 63.6
1831 Male, age 72, unknown 42.8
2850 Male, age 76, both hemispheres 31.9
1840 Male, age 53, unknown 29.2
Periaquaductal grey, lateral
nTPM: 49.9
2272 Male, age 74, both hemispheres 62.8
2053 Male, age 18, unknown 49.3
2140 Male, age 76, both hemispheres 37.5
Pretectal area
nTPM: 55.0
2407 Male, age 75, both hemispheres 77.0
2316 Male, age 76, right hemisphere 75.3
1815 Male, age 53, unknown 65.5
2825 Male, age 18, unknown 57.3
2007 Male, age 72, unknown 55.2
1817 Female, age 42, unknown 51.8
2667 Female, age 75, unknown 51.0
2273 Male, age 74, both hemispheres 46.4
2224 Female, age 72, unknown 44.3
1944 Female, age 72, unknown 43.0
1816 Male, age 51, unknown 38.5
Red nucleus
nTPM: 92.7
1904 Male, age 53, unknown 103.6
2769 Male, age 72, unknown 101.2
1865 Male, age 51, unknown 100.5
2785 Male, age 18, unknown 100.2
2227 Male, age 72, unknown 99.6
2823 Male, age 76, right hemisphere 95.7
2588 Male, age 74, left hemisphere 92.1
2503 Female, age 72, unknown 91.9
1821 Female, age 72, unknown 87.3
2584 Male, age 75, left hemisphere 83.1
1954 Female, age 42, unknown 78.4
2725 Female, age 75, unknown 78.4
Substantia nigra
nTPM: 59.1
2409 Female, age 72, unknown 76.3
2583 Male, age 75, right hemisphere 74.8
1851 Male, age 51, unknown 66.3
2590 Female, age 75, unknown 63.7
2699 Male, age 18, unknown 56.3
1889 Female, age 72, unknown 54.5
1941 Male, age 53, unknown 54.5
2241 Male, age 72, unknown 54.5
2665 Male, age 74, both hemispheres 45.8
1916 Female, age 42, unknown 44.1
Superior colliculus
nTPM: 70.4
1995 Male, age 72, unknown 101.1
1913 Female, age 42, unknown 98.4
1895 Male, age 76, right hemisphere 78.4
2668 Female, age 75, unknown 75.3
1839 Male, age 51, unknown 70.1
2587 Male, age 74, left hemisphere 66.0
1796 Male, age 53, unknown 57.3
2664 Male, age 75, both hemispheres 54.4
2087 Female, age 72, unknown 52.9
2261 Male, age 18, unknown 49.9
Ventral tegmental area
nTPM: 61.3
2223 Female, age 72, unknown 75.8
2410 Female, age 72, unknown 73.2
1942 Male, age 51, unknown 60.1
2218 Male, age 76, both hemispheres 53.6
1915 Female, age 42, unknown 53.2
2021 Male, age 53, unknown 51.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 20.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.4
Samples: 139

Max nTPM: 58.6
Min nTPM: 6.4
Std nTPM: 8.7
Median nTPM: 18.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 58.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 48.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 46.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 45.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 43.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 40.8
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 40.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 38.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 36.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 35.2
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 34.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 95.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 95.4
FF:10158-103A5 76 years, female 95.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 19.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.7
Samples: 4

Max nTPM: 24.2
Min nTPM: 12.9
Sample A Female 14.2
Sample B Female 24.2
Sample C Male 12.9
Sample D Male 15.6
Midbrain
nTPM: 13.3
Samples: 4

Max nTPM: 17.3
Min nTPM: 11.5
Sample A Female 12.6
Sample B Female 11.7
Sample C Male 17.3
Sample D Male 11.5
Periaqueductal gray
nTPM: 9.2
Samples: 3

Max nTPM: 9.7
Min nTPM: 8.7
Sample B Female 9.7
Sample C Male 9.3
Sample D Male 8.7
Superior colliculi
nTPM: 19.7
Samples: 4

Max nTPM: 31.8
Min nTPM: 13.4
Sample A Female 17.6
Sample B Female 31.8
Sample C Male 13.4
Sample D Male 15.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 12.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.9
Samples: 4

Max nTPM: 13.7
Min nTPM: 12.2
Sample A Male 13.7
Sample B Male 13.4
Sample C Female 12.4
Sample D Female 12.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
68162203 Antisense, RP_041122_01_G01, Mouse strain C57BL/6J (56 days, male) 0.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org