HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:20.2 nTPM
HPA Brain:96.6 nTPM
GTEx:20.2 nTPM
FANTOM5:83.0 Scaled Tags Per Million
Pig:64.3 nTPM
Mouse:31.2 nTPM
Allen mouse:2.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA039410Antibody HPA040380Antibody CAB009723
Glial cells LowLowMedium
Neuronal cells MediumMediumHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 96.6
Sample id Sample description nTPM
Hippocampus
nTPM: 84.0
1898 Male, age 80, left hemisphere 95.7
1855 Male, age 76, left hemisphere 90.5
2148 Female, age 91, left hemisphere 86.7
1911 Female, age 85, right hemisphere 82.5
2621 Female, age 67, right hemisphere 80.7
2529 Female, age 94, left hemisphere 67.9
Dentate gyrus
nTPM: 90.4
1927 Female, age 91, both hemispheres 115.0
2246 Female, age 85, both hemispheres 91.0
2531 Female, age 67, both hemispheres 90.9
2010 Male, age 76, both hemispheres 87.3
2530 Female, age 94, left hemisphere 79.3
2528 Male, age 74, both hemispheres 79.0
Entorhinal gyrus
nTPM: 80.4
1938 Female, age 85, left hemisphere 87.9
2613 Female, age 94, left hemisphere 84.0
1787 Male, age 76, left hemisphere 81.0
2686 Male, age 75, right hemisphere 80.6
2764 Male, age 80, right hemisphere 77.1
2117 Female, age 91, right hemisphere 71.6
Hippocampus, CA1
nTPM: 96.6
2749 Male, age 80, left hemisphere 136.5
1873 Female, age 85, both hemispheres 93.5
2045 Male, age 76, both hemispheres 91.4
2527 Male, age 74, both hemispheres 84.6
2082 Female, age 91, right hemisphere 76.8
Hippocampus, CA2
nTPM: 81.8
1892 Male, age 76, both hemispheres 101.8
1963 Male, age 80, left hemisphere 91.7
2249 Male, age 74, both hemispheres 79.3
2113 Female, age 91, right hemisphere 76.7
1940 Female, age 85, left hemisphere 70.9
2437 Female, age 94, left hemisphere 70.4
Hippocampus, CA3
nTPM: 92.3
2137 Male, age 80, left hemisphere 126.3
1867 Male, age 76, both hemispheres 94.6
2620 Female, age 94, left hemisphere 89.4
2861 Female, age 67, both hemispheres 84.1
1891 Female, age 85, both hemispheres 82.1
2436 Male, age 74, both hemispheres 77.5
Parahippocampal cortex
nTPM: 86.9
2693 Female, age 94, both hemispheres 101.1
2245 Female, age 91, both hemispheres 95.8
1850 Male, age 80, both hemispheres 93.1
1933 Female, age 85, both hemispheres 91.8
2532 Female, age 72, left hemisphere 88.9
2250 Female, age 67, right hemisphere 84.7
1990 Female, age 91, right hemisphere 83.7
2692 Male, age 74, both hemispheres 81.7
2622 Female, age 67, right hemisphere 79.3
2018 Male, age 76, both hemispheres 69.1
Perirhinal gyrus
nTPM: 93.0
1841 Female, age 85, right hemisphere 99.5
2848 Male, age 76, right hemisphere 95.6
1847 Female, age 91, left hemisphere 94.6
2521 Female, age 94, right hemisphere 90.2
1794 Male, age 80, right hemisphere 85.1
Subiculum
nTPM: 77.9
1901 Male, age 80, both hemispheres 89.4
1977 Female, age 85, both hemispheres 82.7
2438 Female, age 94, left hemisphere 78.3
2729 Female, age 91, right hemisphere 76.7
2619 Male, age 74, both hemispheres 71.0
2042 Male, age 76, both hemispheres 69.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 20.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 20.2
Samples: 197

Max nTPM: 37.6
Min nTPM: 11.1
Std nTPM: 3.8
Median nTPM: 19.4
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 37.6
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 34.8
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 31.9
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 31.0
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 28.6
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 27.6
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 27.5
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 27.4
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 27.0
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 26.7
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 26.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 83.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 83.0
FF:10169-103B7 60 years, female 92.4
FF:10153-102I9 76 years, female 73.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 64.3
Pig sample Sample description nTPM
Subiculum
nTPM: 60.5
Samples: 4

Max nTPM: 64.3
Min nTPM: 55.4
Sample A Female 64.3
Sample B Female 55.4
Sample C Male 62.1
Sample D Male 60.3
Dorsal hippocampus
nTPM: 64.4
Samples: 4

Max nTPM: 67.9
Min nTPM: 59.9
Sample A Female 67.9
Sample B Female 62.7
Sample C Male 66.9
Sample D Male 59.9
Entorhinal cortex
nTPM: 61.5
Samples: 4

Max nTPM: 63.3
Min nTPM: 60.3
Sample A Female 60.3
Sample B Female 63.3
Sample C Male 60.4
Sample D Male 62.1
Ventral hippocampus
nTPM: 63.2
Samples: 4

Max nTPM: 75.1
Min nTPM: 53.6
Sample A Female 75.1
Sample B Female 57.2
Sample C Male 53.6
Sample D Male 67.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 31.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 31.2
Samples: 4

Max nTPM: 38.6
Min nTPM: 27.8
Sample A Male 29.9
Sample B Male 28.3
Sample C Female 27.8
Sample D Female 38.6
Hippocampal formation
nTPM: 28.5
Samples: 4

Max nTPM: 32.8
Min nTPM: 25.1
Sample A Male 25.1
Sample B Male 30.8
Sample C Female 32.8
Sample D Female 25.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.4
1927 Antisense, RP_Baylor_103094, Mouse strain C57BL/6J (56 days, male) 2.8
79591689 Antisense, RP_071204_04_H03, Mouse strain C57BL/6J (56 days, male) 2.0
79904160 Antisense, RP_071204_04_H03, Mouse strain C57BL/6J (56 days, male) 1.2

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