MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.9 nTPM
HPA Brain:55.7 nTPM
GTEx:8.9 nTPM
FANTOM5:28.4 Scaled Tags Per Million
Pig:24.5 nTPM
Mouse:15.5 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 55.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.9
2219 Male, age 76, both hemispheres 59.6
2019 Male, age 18, unknown 52.9
1833 Male, age 53, unknown 49.7
1830 Male, age 51, unknown 48.2
2411 Female, age 72, unknown 48.2
2666 Male, age 74, left hemisphere 47.3
1827 Male, age 72, unknown 41.5
2828 Female, age 72, unknown 41.4
2586 Male, age 75, left hemisphere 40.4
1870 Female, age 42, unknown 40.1
Dorsal raphe nucleus
nTPM: 49.8
2750 Male, age 76, both hemispheres 51.6
1828 Male, age 53, unknown 49.9
2016 Female, age 72, unknown 49.4
2298 Female, age 72, unknown 49.2
2047 Male, age 72, unknown 49.0
Inferior colliculus
nTPM: 47.2
2097 Female, age 72, unknown 49.7
1890 Male, age 53, unknown 48.3
1848 Female, age 42, unknown 46.0
2849 Male, age 72, unknown 44.9
Median raphe nucleus
nTPM: 55.7
2220 Male, age 76, midline 55.7
Periaquaductal grey, anterior
nTPM: 45.2
2502 Female, age 75, unknown 48.0
1947 Male, age 18, unknown 46.4
1795 Male, age 51, unknown 41.3
Periaquaductal grey, dorsal
nTPM: 45.8
2464 Female, age 72, unknown 49.9
1831 Male, age 72, unknown 47.2
1840 Male, age 53, unknown 44.2
2850 Male, age 76, both hemispheres 41.9
Periaquaductal grey, lateral
nTPM: 43.6
2140 Male, age 76, both hemispheres 44.6
2053 Male, age 18, unknown 43.7
2272 Male, age 74, both hemispheres 42.3
Pretectal area
nTPM: 45.1
2667 Female, age 75, unknown 55.1
1817 Female, age 42, unknown 48.5
1944 Female, age 72, unknown 47.5
2273 Male, age 74, both hemispheres 47.1
2224 Female, age 72, unknown 46.5
2407 Male, age 75, both hemispheres 45.7
1815 Male, age 53, unknown 45.1
2007 Male, age 72, unknown 41.4
1816 Male, age 51, unknown 41.0
2825 Male, age 18, unknown 40.1
2316 Male, age 76, right hemisphere 38.1
Red nucleus
nTPM: 47.8
1904 Male, age 53, unknown 52.3
1865 Male, age 51, unknown 51.4
1821 Female, age 72, unknown 51.0
2823 Male, age 76, right hemisphere 50.5
2503 Female, age 72, unknown 50.1
2588 Male, age 74, left hemisphere 48.1
2227 Male, age 72, unknown 47.1
2785 Male, age 18, unknown 46.9
1954 Female, age 42, unknown 45.5
2725 Female, age 75, unknown 44.9
2769 Male, age 72, unknown 44.2
2584 Male, age 75, left hemisphere 41.7
Substantia nigra
nTPM: 54.7
2241 Male, age 72, unknown 76.8
2409 Female, age 72, unknown 62.6
1916 Female, age 42, unknown 59.3
2699 Male, age 18, unknown 57.1
1851 Male, age 51, unknown 55.2
1889 Female, age 72, unknown 53.7
1941 Male, age 53, unknown 52.9
2665 Male, age 74, both hemispheres 47.1
2590 Female, age 75, unknown 41.5
2583 Male, age 75, right hemisphere 41.1
Superior colliculus
nTPM: 42.7
1839 Male, age 51, unknown 46.8
2087 Female, age 72, unknown 45.8
2664 Male, age 75, both hemispheres 45.3
2668 Female, age 75, unknown 45.1
1895 Male, age 76, right hemisphere 44.0
1913 Female, age 42, unknown 42.0
1995 Male, age 72, unknown 41.0
2587 Male, age 74, left hemisphere 39.5
2261 Male, age 18, unknown 39.0
1796 Male, age 53, unknown 38.5
Ventral tegmental area
nTPM: 52.1
2218 Male, age 76, both hemispheres 55.3
2223 Female, age 72, unknown 53.6
2410 Female, age 72, unknown 53.3
1915 Female, age 42, unknown 50.4
2021 Male, age 53, unknown 50.3
1942 Male, age 51, unknown 49.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 8.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.9
Samples: 139

Max nTPM: 16.8
Min nTPM: 4.9
Std nTPM: 2.0
Median nTPM: 8.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 16.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 16.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 13.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 13.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 13.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 13.0
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 12.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 12.7
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 12.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 12.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 11.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.4
FF:10158-103A5 76 years, female 28.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 24.5
Samples: 4

Max nTPM: 26.1
Min nTPM: 23.7
Sample A Female 26.1
Sample B Female 24.0
Sample C Male 23.7
Sample D Male 24.2
Midbrain
nTPM: 23.7
Samples: 4

Max nTPM: 33.5
Min nTPM: 18.5
Sample A Female 33.5
Sample B Female 23.8
Sample C Male 18.5
Sample D Male 18.8
Periaqueductal gray
nTPM: 19.8
Samples: 3

Max nTPM: 20.1
Min nTPM: 19.5
Sample B Female 19.5
Sample C Male 19.9
Sample D Male 20.1
Superior colliculi
nTPM: 21.6
Samples: 4

Max nTPM: 23.3
Min nTPM: 19.6
Sample A Female 21.4
Sample B Female 19.6
Sample C Male 23.3
Sample D Male 21.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 15.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.5
Samples: 4

Max nTPM: 16.2
Min nTPM: 14.3
Sample A Male 14.3
Sample B Male 16.2
Sample C Female 15.5
Sample D Female 16.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70228400 Antisense, RP_050524_03_E03, Mouse strain C57BL/6J (56 days, male) 0.1

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