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PDCD10
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  • PDCD10
PROTEIN SUMMARY SECTION OVERVIEW GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

PDCD10
Synonyms CCM3, TFAR15
Gene descriptioni

Full gene name according to HGNC.

Programmed cell death 10
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Human disease related genes
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 3
Cytoband q26.1
Chromosome location (bp) 167683298 - 167734939
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

13
Ensembl ENSG00000114209 (version 109)
Entrez gene 11235
HGNC HGNC:8761
UniProt Q9BUL8 (UniProt - Evidence at protein level)
neXtProt NX_Q9BUL8
GeneCards PDCD10
Antibodypedia PDCD10 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Promotes cell proliferation. Modulates apoptotic pathways. Increases mitogen-activated protein kinase activity and STK26 activity 1. Important for cell migration, and for normal structure and assembly of the Golgi complex 2. Important for KDR/VEGFR2 signaling. Increases the stability of KDR/VEGFR2 and prevents its breakdown. Required for normal cardiovascular development. Required for normal angiogenesis, vasculogenesis and hematopoiesis during embryonic development (By similarity).... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Angiogenesis, Apoptosis
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes an evolutionarily conserved protein associated with cell apoptosis. The protein interacts with the serine/threonine protein kinase MST4 to modulate the extracellular signal-regulated kinase (ERK) pathway. It also interacts with and is phosphoryated by serine/threonine kinase 25, and is thought to function in a signaling pathway essential for vascular developent. Mutations in this gene are one cause of cerebral cavernous malformations, which are vascular malformations that cause seizures and cerebral hemorrhages. Multiple alternatively spliced variants, encoding the same protein, have been identified. [provided by RefSeq, Jul 2008]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The ENSP identifier links to the Ensembl website protein summary, while the ENST identifier links to the Ensembl website transcript summary for the selected splice variant. The data in the UniProt column can be expanded to show links to all matching UniProt identifiers for this protein.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The Gene Ontology terms assigned to this protein are listed if expanding the Gene ontology column. The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide (according to a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius) and the number of predicted transmembrane region(s) (according to MDM) are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
PDCD10-201
ENSP00000376506
ENST00000392750
Q9BUL8
[Direct mapping] Programmed cell death protein 10
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Congenital malformations
   Congenital malformations of the nervous system
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000139 [Golgi membrane]
GO:0001525 [angiogenesis]
GO:0003158 [endothelium development]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005794 [Golgi apparatus]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0006915 [apoptotic process]
GO:0008284 [positive regulation of cell population proliferation]
GO:0010628 [positive regulation of gene expression]
GO:0010629 [negative regulation of gene expression]
GO:0016020 [membrane]
GO:0019901 [protein kinase binding]
GO:0030335 [positive regulation of cell migration]
GO:0032874 [positive regulation of stress-activated MAPK cascade]
GO:0033138 [positive regulation of peptidyl-serine phosphorylation]
GO:0036481 [intrinsic apoptotic signaling pathway in response to hydrogen peroxide]
GO:0042542 [response to hydrogen peroxide]
GO:0042803 [protein homodimerization activity]
GO:0043066 [negative regulation of apoptotic process]
GO:0043406 [positive regulation of MAP kinase activity]
GO:0044319 [wound healing, spreading of cells]
GO:0045747 [positive regulation of Notch signaling pathway]
GO:0045765 [regulation of angiogenesis]
GO:0047485 [protein N-terminus binding]
GO:0050821 [protein stabilization]
GO:0051683 [establishment of Golgi localization]
GO:0070062 [extracellular exosome]
GO:0071902 [positive regulation of protein serine/threonine kinase activity]
GO:0090051 [negative regulation of cell migration involved in sprouting angiogenesis]
GO:0090168 [Golgi reassembly]
GO:0090316 [positive regulation of intracellular protein transport]
GO:0090443 [FAR/SIN/STRIPAK complex]
GO:1903358 [regulation of Golgi organization]
GO:1903588 [negative regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis]
GO:1990830 [cellular response to leukemia inhibitory factor]
Show all
212 aa
24.7 kDa
No 0
PDCD10-202
ENSP00000420021
ENST00000461494
Q9BUL8
[Direct mapping] Programmed cell death protein 10
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Congenital malformations
   Congenital malformations of the nervous system
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000139 [Golgi membrane]
GO:0001525 [angiogenesis]
GO:0003158 [endothelium development]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005794 [Golgi apparatus]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0006915 [apoptotic process]
GO:0008284 [positive regulation of cell population proliferation]
GO:0010628 [positive regulation of gene expression]
GO:0010629 [negative regulation of gene expression]
GO:0016020 [membrane]
GO:0019901 [protein kinase binding]
GO:0030335 [positive regulation of cell migration]
GO:0032874 [positive regulation of stress-activated MAPK cascade]
GO:0033138 [positive regulation of peptidyl-serine phosphorylation]
GO:0036481 [intrinsic apoptotic signaling pathway in response to hydrogen peroxide]
GO:0042542 [response to hydrogen peroxide]
GO:0042803 [protein homodimerization activity]
GO:0043066 [negative regulation of apoptotic process]
GO:0043406 [positive regulation of MAP kinase activity]
GO:0044319 [wound healing, spreading of cells]
GO:0045747 [positive regulation of Notch signaling pathway]
GO:0045765 [regulation of angiogenesis]
GO:0047485 [protein N-terminus binding]
GO:0050821 [protein stabilization]
GO:0051683 [establishment of Golgi localization]
GO:0070062 [extracellular exosome]
GO:0071902 [positive regulation of protein serine/threonine kinase activity]
GO:0090051 [negative regulation of cell migration involved in sprouting angiogenesis]
GO:0090168 [Golgi reassembly]
GO:0090316 [positive regulation of intracellular protein transport]
GO:0090443 [FAR/SIN/STRIPAK complex]
GO:1903358 [regulation of Golgi organization]
GO:1903588 [negative regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis]
Show all
212 aa
24.7 kDa
No 0
PDCD10-203
ENSP00000420424
ENST00000462725
C9JND6
[Direct mapping] Programmed cell death protein 10
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Congenital malformations of the nervous system
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000139 [Golgi membrane]
GO:0005737 [cytoplasm]
GO:0005886 [plasma membrane]
GO:0016020 [membrane]
Show all
146 aa
16.8 kDa
No 0
PDCD10-205
ENSP00000418160
ENST00000464360
C9J932
[Direct mapping] Programmed cell death protein 10
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Congenital malformations of the nervous system
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000139 [Golgi membrane]
GO:0005737 [cytoplasm]
GO:0005886 [plasma membrane]
GO:0016020 [membrane]
Show all
79 aa
9 kDa
No 0
PDCD10-206
ENSP00000417202
ENST00000470131
Q9BUL8
[Direct mapping] Programmed cell death protein 10
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Congenital malformations
   Congenital malformations of the nervous system
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000139 [Golgi membrane]
GO:0001525 [angiogenesis]
GO:0003158 [endothelium development]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005794 [Golgi apparatus]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0006915 [apoptotic process]
GO:0008284 [positive regulation of cell population proliferation]
GO:0010628 [positive regulation of gene expression]
GO:0010629 [negative regulation of gene expression]
GO:0016020 [membrane]
GO:0019901 [protein kinase binding]
GO:0030335 [positive regulation of cell migration]
GO:0032874 [positive regulation of stress-activated MAPK cascade]
GO:0033138 [positive regulation of peptidyl-serine phosphorylation]
GO:0036481 [intrinsic apoptotic signaling pathway in response to hydrogen peroxide]
GO:0042542 [response to hydrogen peroxide]
GO:0042803 [protein homodimerization activity]
GO:0043066 [negative regulation of apoptotic process]
GO:0043406 [positive regulation of MAP kinase activity]
GO:0044319 [wound healing, spreading of cells]
GO:0045747 [positive regulation of Notch signaling pathway]
GO:0045765 [regulation of angiogenesis]
GO:0047485 [protein N-terminus binding]
GO:0050821 [protein stabilization]
GO:0051683 [establishment of Golgi localization]
GO:0070062 [extracellular exosome]
GO:0071902 [positive regulation of protein serine/threonine kinase activity]
GO:0090051 [negative regulation of cell migration involved in sprouting angiogenesis]
GO:0090168 [Golgi reassembly]
GO:0090316 [positive regulation of intracellular protein transport]
GO:0090443 [FAR/SIN/STRIPAK complex]
GO:1903358 [regulation of Golgi organization]
GO:1903588 [negative regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis]
Show all
212 aa
24.7 kDa
No 0
PDCD10-207
ENSP00000417876
ENST00000471885
C9J6F3
[Direct mapping] Programmed cell death protein 10
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Congenital malformations of the nervous system
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000139 [Golgi membrane]
GO:0005737 [cytoplasm]
GO:0005886 [plasma membrane]
GO:0016020 [membrane]
Show all
186 aa
21.8 kDa
No 0
PDCD10-208
ENSP00000418317
ENST00000473645
Q9BUL8
[Direct mapping] Programmed cell death protein 10
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Congenital malformations
   Congenital malformations of the nervous system
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000139 [Golgi membrane]
GO:0001525 [angiogenesis]
GO:0003158 [endothelium development]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005794 [Golgi apparatus]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0006915 [apoptotic process]
GO:0008284 [positive regulation of cell population proliferation]
GO:0010628 [positive regulation of gene expression]
GO:0010629 [negative regulation of gene expression]
GO:0016020 [membrane]
GO:0019901 [protein kinase binding]
GO:0030335 [positive regulation of cell migration]
GO:0032874 [positive regulation of stress-activated MAPK cascade]
GO:0033138 [positive regulation of peptidyl-serine phosphorylation]
GO:0036481 [intrinsic apoptotic signaling pathway in response to hydrogen peroxide]
GO:0042542 [response to hydrogen peroxide]
GO:0042803 [protein homodimerization activity]
GO:0043066 [negative regulation of apoptotic process]
GO:0043406 [positive regulation of MAP kinase activity]
GO:0044319 [wound healing, spreading of cells]
GO:0045747 [positive regulation of Notch signaling pathway]
GO:0045765 [regulation of angiogenesis]
GO:0047485 [protein N-terminus binding]
GO:0050821 [protein stabilization]
GO:0051683 [establishment of Golgi localization]
GO:0070062 [extracellular exosome]
GO:0071902 [positive regulation of protein serine/threonine kinase activity]
GO:0090051 [negative regulation of cell migration involved in sprouting angiogenesis]
GO:0090168 [Golgi reassembly]
GO:0090316 [positive regulation of intracellular protein transport]
GO:0090443 [FAR/SIN/STRIPAK complex]
GO:1903358 [regulation of Golgi organization]
GO:1903588 [negative regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis]
Show all
212 aa
24.7 kDa
No 0
PDCD10-209
ENSP00000417118
ENST00000475915
C9J5C3
[Direct mapping] Programmed cell death protein 10
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Congenital malformations of the nervous system
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000139 [Golgi membrane]
GO:0005737 [cytoplasm]
GO:0005886 [plasma membrane]
GO:0016020 [membrane]
Show all
202 aa
23.6 kDa
No 0
PDCD10-210
ENSP00000420308
ENST00000479121
H7C5M9
[Direct mapping] Programmed cell death protein 10
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Congenital malformations of the nervous system
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000139 [Golgi membrane]
GO:0005737 [cytoplasm]
GO:0005886 [plasma membrane]
GO:0016020 [membrane]
Show all
122 aa
14.1 kDa
No 0
PDCD10-214
ENSP00000420266
ENST00000487947
C9J6F3
[Direct mapping] Programmed cell death protein 10
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Congenital malformations of the nervous system
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000139 [Golgi membrane]
GO:0005737 [cytoplasm]
GO:0005886 [plasma membrane]
GO:0016020 [membrane]
Show all
186 aa
21.8 kDa
No 0
PDCD10-215
ENSP00000420014
ENST00000492139
C9JSA3
[Direct mapping] Programmed cell death protein 10
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Congenital malformations of the nervous system
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000139 [Golgi membrane]
GO:0005737 [cytoplasm]
GO:0005886 [plasma membrane]
GO:0016020 [membrane]
Show all
134 aa
15.6 kDa
No 0
PDCD10-216
ENSP00000417309
ENST00000492396
C9J363
[Direct mapping] Programmed cell death 10, isoform CRA_b; Programmed cell death protein 10
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Congenital malformations of the nervous system
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005737 [cytoplasm]
GO:0005886 [plasma membrane]
GO:0016020 [membrane]
Show all
149 aa
17.5 kDa
No 0
PDCD10-218
ENSP00000420553
ENST00000497056
Q9BUL8
[Direct mapping] Programmed cell death protein 10
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Congenital malformations
   Congenital malformations of the nervous system
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000139 [Golgi membrane]
GO:0001525 [angiogenesis]
GO:0003158 [endothelium development]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005794 [Golgi apparatus]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0006915 [apoptotic process]
GO:0008284 [positive regulation of cell population proliferation]
GO:0010628 [positive regulation of gene expression]
GO:0010629 [negative regulation of gene expression]
GO:0016020 [membrane]
GO:0019901 [protein kinase binding]
GO:0030335 [positive regulation of cell migration]
GO:0032874 [positive regulation of stress-activated MAPK cascade]
GO:0033138 [positive regulation of peptidyl-serine phosphorylation]
GO:0036481 [intrinsic apoptotic signaling pathway in response to hydrogen peroxide]
GO:0042542 [response to hydrogen peroxide]
GO:0042803 [protein homodimerization activity]
GO:0043066 [negative regulation of apoptotic process]
GO:0043406 [positive regulation of MAP kinase activity]
GO:0044319 [wound healing, spreading of cells]
GO:0045747 [positive regulation of Notch signaling pathway]
GO:0045765 [regulation of angiogenesis]
GO:0047485 [protein N-terminus binding]
GO:0050821 [protein stabilization]
GO:0051683 [establishment of Golgi localization]
GO:0070062 [extracellular exosome]
GO:0071902 [positive regulation of protein serine/threonine kinase activity]
GO:0090051 [negative regulation of cell migration involved in sprouting angiogenesis]
GO:0090168 [Golgi reassembly]
GO:0090316 [positive regulation of intracellular protein transport]
GO:0090443 [FAR/SIN/STRIPAK complex]
GO:1903358 [regulation of Golgi organization]
GO:1903588 [negative regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis]
Show all
212 aa
24.7 kDa
No 0

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