MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:129.7 nTPM
HPA Brain:193.7 nTPM
GTEx:129.7 nTPM
FANTOM5:412.8 Scaled Tags Per Million
Pig:218.7 nTPM
Mouse:150.5 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 193.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 175.8
1870 Female, age 42, unknown 216.7
2828 Female, age 72, unknown 200.1
1830 Male, age 51, unknown 189.8
2666 Male, age 74, left hemisphere 188.6
1833 Male, age 53, unknown 188.1
2586 Male, age 75, left hemisphere 175.9
2411 Female, age 72, unknown 172.5
1827 Male, age 72, unknown 155.4
2019 Male, age 18, unknown 135.6
2219 Male, age 76, both hemispheres 135.5
Dorsal raphe nucleus
nTPM: 186.7
2750 Male, age 76, both hemispheres 205.4
2016 Female, age 72, unknown 193.6
2047 Male, age 72, unknown 188.3
2298 Female, age 72, unknown 181.9
1828 Male, age 53, unknown 164.6
Inferior colliculus
nTPM: 152.1
2849 Male, age 72, unknown 168.8
1890 Male, age 53, unknown 151.0
2097 Female, age 72, unknown 146.7
1848 Female, age 42, unknown 142.1
Median raphe nucleus
nTPM: 192.3
2220 Male, age 76, midline 192.3
Periaquaductal grey, anterior
nTPM: 174.7
1795 Male, age 51, unknown 182.8
1947 Male, age 18, unknown 172.4
2502 Female, age 75, unknown 168.9
Periaquaductal grey, dorsal
nTPM: 176.0
2850 Male, age 76, both hemispheres 201.2
1831 Male, age 72, unknown 181.8
1840 Male, age 53, unknown 164.2
2464 Female, age 72, unknown 156.8
Periaquaductal grey, lateral
nTPM: 180.2
2053 Male, age 18, unknown 194.4
2140 Male, age 76, both hemispheres 174.7
2272 Male, age 74, both hemispheres 171.7
Pretectal area
nTPM: 156.1
2825 Male, age 18, unknown 203.2
2224 Female, age 72, unknown 178.8
2273 Male, age 74, both hemispheres 173.7
2316 Male, age 76, right hemisphere 165.4
2407 Male, age 75, both hemispheres 164.0
2667 Female, age 75, unknown 162.1
1815 Male, age 53, unknown 158.1
1817 Female, age 42, unknown 147.9
2007 Male, age 72, unknown 122.9
1944 Female, age 72, unknown 122.4
1816 Male, age 51, unknown 118.4
Red nucleus
nTPM: 189.9
1904 Male, age 53, unknown 211.5
2769 Male, age 72, unknown 204.1
1865 Male, age 51, unknown 202.8
1821 Female, age 72, unknown 202.2
2227 Male, age 72, unknown 201.8
1954 Female, age 42, unknown 196.0
2823 Male, age 76, right hemisphere 189.9
2725 Female, age 75, unknown 189.8
2503 Female, age 72, unknown 185.0
2588 Male, age 74, left hemisphere 172.4
2584 Male, age 75, left hemisphere 163.8
2785 Male, age 18, unknown 159.8
Substantia nigra
nTPM: 169.3
2699 Male, age 18, unknown 217.6
2665 Male, age 74, both hemispheres 204.1
1851 Male, age 51, unknown 186.1
1916 Female, age 42, unknown 180.0
2583 Male, age 75, right hemisphere 176.2
2590 Female, age 75, unknown 167.4
1941 Male, age 53, unknown 145.9
1889 Female, age 72, unknown 140.3
2241 Male, age 72, unknown 138.9
2409 Female, age 72, unknown 136.8
Superior colliculus
nTPM: 168.2
1913 Female, age 42, unknown 212.6
1995 Male, age 72, unknown 208.6
2587 Male, age 74, left hemisphere 186.6
2664 Male, age 75, both hemispheres 172.7
1839 Male, age 51, unknown 170.4
1796 Male, age 53, unknown 170.0
2668 Female, age 75, unknown 162.2
2261 Male, age 18, unknown 137.6
1895 Male, age 76, right hemisphere 130.9
2087 Female, age 72, unknown 130.6
Ventral tegmental area
nTPM: 193.7
2223 Female, age 72, unknown 228.6
2021 Male, age 53, unknown 210.8
1915 Female, age 42, unknown 191.9
1942 Male, age 51, unknown 178.9
2218 Male, age 76, both hemispheres 176.3
2410 Female, age 72, unknown 175.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 129.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 129.7
Samples: 139

Max nTPM: 255.5
Min nTPM: 61.8
Std nTPM: 33.3
Median nTPM: 126.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 255.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 230.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 214.9
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 213.4
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 210.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 187.9
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 186.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 185.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 184.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 183.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 178.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 412.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 412.8
FF:10158-103A5 76 years, female 412.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 218.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 218.7
Samples: 4

Max nTPM: 229.3
Min nTPM: 195.5
Sample A Female 229.3
Sample B Female 195.5
Sample C Male 228.6
Sample D Male 221.5
Midbrain
nTPM: 199.4
Samples: 4

Max nTPM: 363.4
Min nTPM: 129.0
Sample A Female 363.4
Sample B Female 174.7
Sample C Male 129.0
Sample D Male 130.4
Periaqueductal gray
nTPM: 185.1
Samples: 3

Max nTPM: 218.4
Min nTPM: 161.8
Sample B Female 161.8
Sample C Male 218.4
Sample D Male 175.0
Superior colliculi
nTPM: 151.4
Samples: 4

Max nTPM: 187.6
Min nTPM: 124.4
Sample A Female 187.6
Sample B Female 131.1
Sample C Male 124.4
Sample D Male 162.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 150.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 150.5
Samples: 4

Max nTPM: 166.6
Min nTPM: 135.7
Sample A Male 166.6
Sample B Male 148.1
Sample C Female 135.7
Sample D Female 151.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
2263 Antisense, RP_Baylor_102821, Mouse strain C57BL/6J (56 days, male) 0.7

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