MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.3 nTPM
HPA Brain:5.4 nTPM
GTEx:4.3 nTPM
FANTOM5:0.0 Scaled Tags Per Million
Pig:14.9 nTPM
Mouse:0.0 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 5.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 5.0
2219 Male, age 76, both hemispheres 6.0
1827 Male, age 72, unknown 5.7
2019 Male, age 18, unknown 5.3
2411 Female, age 72, unknown 5.2
1870 Female, age 42, unknown 5.1
2828 Female, age 72, unknown 5.0
2666 Male, age 74, left hemisphere 4.6
1833 Male, age 53, unknown 4.5
2586 Male, age 75, left hemisphere 4.5
1830 Male, age 51, unknown 4.1
Dorsal raphe nucleus
nTPM: 5.1
2298 Female, age 72, unknown 5.5
2047 Male, age 72, unknown 5.3
2016 Female, age 72, unknown 5.2
1828 Male, age 53, unknown 4.8
2750 Male, age 76, both hemispheres 4.6
Inferior colliculus
nTPM: 5.3
1890 Male, age 53, unknown 5.7
1848 Female, age 42, unknown 5.5
2097 Female, age 72, unknown 5.2
2849 Male, age 72, unknown 5.0
Median raphe nucleus
nTPM: 5.3
2220 Male, age 76, midline 5.3
Periaquaductal grey, anterior
nTPM: 5.1
1947 Male, age 18, unknown 5.3
2502 Female, age 75, unknown 5.2
1795 Male, age 51, unknown 4.7
Periaquaductal grey, dorsal
nTPM: 5.4
1840 Male, age 53, unknown 5.9
1831 Male, age 72, unknown 5.3
2850 Male, age 76, both hemispheres 5.2
2464 Female, age 72, unknown 5.1
Periaquaductal grey, lateral
nTPM: 4.5
2140 Male, age 76, both hemispheres 4.8
2053 Male, age 18, unknown 4.6
2272 Male, age 74, both hemispheres 4.1
Pretectal area
nTPM: 5.3
2007 Male, age 72, unknown 7.2
1816 Male, age 51, unknown 6.8
1815 Male, age 53, unknown 6.7
1817 Female, age 42, unknown 5.1
2224 Female, age 72, unknown 5.1
2667 Female, age 75, unknown 5.0
1944 Female, age 72, unknown 4.9
2273 Male, age 74, both hemispheres 4.6
2407 Male, age 75, both hemispheres 4.6
2316 Male, age 76, right hemisphere 4.2
2825 Male, age 18, unknown 4.1
Red nucleus
nTPM: 4.6
2785 Male, age 18, unknown 5.2
1821 Female, age 72, unknown 5.1
1954 Female, age 42, unknown 5.1
2503 Female, age 72, unknown 5.1
2725 Female, age 75, unknown 5.0
2588 Male, age 74, left hemisphere 4.6
2823 Male, age 76, right hemisphere 4.4
1904 Male, age 53, unknown 4.2
2584 Male, age 75, left hemisphere 4.2
1865 Male, age 51, unknown 4.1
2227 Male, age 72, unknown 3.8
2769 Male, age 72, unknown 3.8
Substantia nigra
nTPM: 5.4
1941 Male, age 53, unknown 6.3
2241 Male, age 72, unknown 6.3
2665 Male, age 74, both hemispheres 5.8
1851 Male, age 51, unknown 5.7
1916 Female, age 42, unknown 5.1
2409 Female, age 72, unknown 5.1
2583 Male, age 75, right hemisphere 5.1
2590 Female, age 75, unknown 5.0
2699 Male, age 18, unknown 5.0
1889 Female, age 72, unknown 4.9
Superior colliculus
nTPM: 4.9
1796 Male, age 53, unknown 5.5
1895 Male, age 76, right hemisphere 5.5
1913 Female, age 42, unknown 5.3
2261 Male, age 18, unknown 5.3
2668 Female, age 75, unknown 5.0
2087 Female, age 72, unknown 4.9
2587 Male, age 74, left hemisphere 4.9
1839 Male, age 51, unknown 4.7
2664 Male, age 75, both hemispheres 4.6
1995 Male, age 72, unknown 3.9
Ventral tegmental area
nTPM: 4.7
2218 Male, age 76, both hemispheres 5.4
1915 Female, age 42, unknown 5.1
2410 Female, age 72, unknown 5.1
1942 Male, age 51, unknown 5.0
2223 Female, age 72, unknown 4.9
2021 Male, age 53, unknown 2.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 4.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.3
Samples: 139

Max nTPM: 14.3
Min nTPM: 0.0
Std nTPM: 3.3
Median nTPM: 4.5
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 14.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 12.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 11.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 11.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 10.9
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 10.6
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 9.9
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 9.4
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 9.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 8.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 8.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.0
FF:10158-103A5 76 years, female 0.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 14.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 11.5
Samples: 4

Max nTPM: 25.5
Min nTPM: 0.3
Sample A Female 0.4
Sample B Female 0.3
Sample C Male 25.5
Sample D Male 19.7
Midbrain
nTPM: 14.0
Samples: 4

Max nTPM: 30.3
Min nTPM: 0.2
Sample A Female 0.2
Sample B Female 0.3
Sample C Male 30.3
Sample D Male 25.1
Periaqueductal gray
nTPM: 14.9
Samples: 3

Max nTPM: 22.9
Min nTPM: 0.4
Sample B Female 0.4
Sample C Male 22.9
Sample D Male 21.4
Superior colliculi
nTPM: 13.9
Samples: 4

Max nTPM: 31.1
Min nTPM: 0.2
Sample A Female 0.3
Sample B Female 0.2
Sample C Male 31.1
Sample D Male 24.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

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