HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:46.3 nTPM
HPA Brain:43.8 nTPM
GTEx:46.3 nTPM
FANTOM5:30.9 Scaled Tags Per Million
Mouse:104.3 nTPM
Allen mouse:2.5 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 43.8
Sample id Sample description nTPM
Hippocampus
nTPM: 38.9
1898 Male, age 80, left hemisphere 51.2
1855 Male, age 76, left hemisphere 40.8
2621 Female, age 67, right hemisphere 40.2
2148 Female, age 91, left hemisphere 38.6
2529 Female, age 94, left hemisphere 34.0
1911 Female, age 85, right hemisphere 28.9
Dentate gyrus
nTPM: 37.9
2530 Female, age 94, left hemisphere 44.3
1927 Female, age 91, both hemispheres 43.0
2010 Male, age 76, both hemispheres 38.6
2528 Male, age 74, both hemispheres 35.7
2531 Female, age 67, both hemispheres 34.1
2246 Female, age 85, both hemispheres 31.9
Entorhinal gyrus
nTPM: 38.3
2764 Male, age 80, right hemisphere 45.1
2613 Female, age 94, left hemisphere 39.1
1938 Female, age 85, left hemisphere 38.6
2686 Male, age 75, right hemisphere 38.1
1787 Male, age 76, left hemisphere 37.2
2117 Female, age 91, right hemisphere 31.6
Hippocampus, CA1
nTPM: 40.3
2749 Male, age 80, left hemisphere 64.7
1873 Female, age 85, both hemispheres 41.0
2527 Male, age 74, both hemispheres 35.8
2045 Male, age 76, both hemispheres 29.9
2082 Female, age 91, right hemisphere 29.8
Hippocampus, CA2
nTPM: 41.1
1963 Male, age 80, left hemisphere 53.3
1892 Male, age 76, both hemispheres 51.4
2437 Female, age 94, left hemisphere 40.1
2249 Male, age 74, both hemispheres 34.9
1940 Female, age 85, left hemisphere 34.2
2113 Female, age 91, right hemisphere 32.5
Hippocampus, CA3
nTPM: 39.8
2137 Male, age 80, left hemisphere 50.5
2861 Female, age 67, both hemispheres 44.5
1867 Male, age 76, both hemispheres 42.8
2620 Female, age 94, left hemisphere 36.3
2436 Male, age 74, both hemispheres 33.1
1891 Female, age 85, both hemispheres 31.8
Parahippocampal cortex
nTPM: 36.5
1850 Male, age 80, both hemispheres 45.1
2245 Female, age 91, both hemispheres 40.0
1933 Female, age 85, both hemispheres 38.4
1990 Female, age 91, right hemisphere 36.5
2622 Female, age 67, right hemisphere 36.3
2250 Female, age 67, right hemisphere 35.2
2693 Female, age 94, both hemispheres 35.1
2532 Female, age 72, left hemisphere 34.4
2692 Male, age 74, both hemispheres 33.5
2018 Male, age 76, both hemispheres 30.8
Perirhinal gyrus
nTPM: 43.8
1847 Female, age 91, left hemisphere 51.0
1794 Male, age 80, right hemisphere 46.6
1841 Female, age 85, right hemisphere 45.1
2521 Female, age 94, right hemisphere 39.1
2848 Male, age 76, right hemisphere 37.3
Subiculum
nTPM: 34.5
1901 Male, age 80, both hemispheres 39.2
1977 Female, age 85, both hemispheres 38.0
2438 Female, age 94, left hemisphere 36.6
2619 Male, age 74, both hemispheres 35.4
2729 Female, age 91, right hemisphere 29.7
2042 Male, age 76, both hemispheres 28.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 46.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 46.3
Samples: 197

Max nTPM: 100.7
Min nTPM: 16.9
Std nTPM: 15.4
Median nTPM: 44.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 100.7
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 88.1
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 86.3
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 82.5
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 82.1
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 78.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 76.9
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 76.2
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 76.2
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 76.1
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 75.7
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 30.9
FF:10169-103B7 60 years, female 36.3
FF:10153-102I9 76 years, female 25.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 104.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 104.2
Samples: 4

Max nTPM: 108.1
Min nTPM: 95.8
Sample A Male 95.8
Sample B Male 105.9
Sample C Female 107.1
Sample D Female 108.1
Hippocampal formation
nTPM: 95.1
Samples: 4

Max nTPM: 109.3
Min nTPM: 86.7
Sample A Male 109.3
Sample B Male 86.7
Sample C Female 92.7
Sample D Female 91.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.5
71280727 Antisense, RP_050818_01_E03, Mouse strain C57BL/6J (56 days, male) 2.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org