MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:50.3 nTPM
HPA Brain:88.3 nTPM
GTEx:50.3 nTPM
FANTOM5:251.0 Scaled Tags Per Million
Pig:92.8 nTPM
Mouse:77.5 nTPM
Allen mouse:5.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 88.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 76.9
1830 Male, age 51, unknown 89.9
1833 Male, age 53, unknown 89.1
2411 Female, age 72, unknown 87.4
1870 Female, age 42, unknown 86.5
2666 Male, age 74, left hemisphere 79.5
2219 Male, age 76, both hemispheres 71.8
1827 Male, age 72, unknown 70.4
2019 Male, age 18, unknown 70.2
2828 Female, age 72, unknown 70.2
2586 Male, age 75, left hemisphere 54.0
Dorsal raphe nucleus
nTPM: 84.9
2016 Female, age 72, unknown 89.0
1828 Male, age 53, unknown 87.3
2750 Male, age 76, both hemispheres 86.9
2047 Male, age 72, unknown 83.2
2298 Female, age 72, unknown 77.8
Inferior colliculus
nTPM: 74.5
2849 Male, age 72, unknown 80.8
1848 Female, age 42, unknown 78.5
1890 Male, age 53, unknown 70.8
2097 Female, age 72, unknown 67.7
Median raphe nucleus
nTPM: 88.3
2220 Male, age 76, midline 88.3
Periaquaductal grey, anterior
nTPM: 70.8
1947 Male, age 18, unknown 83.7
2502 Female, age 75, unknown 69.0
1795 Male, age 51, unknown 59.5
Periaquaductal grey, dorsal
nTPM: 79.3
2850 Male, age 76, both hemispheres 88.8
2464 Female, age 72, unknown 79.1
1840 Male, age 53, unknown 75.4
1831 Male, age 72, unknown 74.0
Periaquaductal grey, lateral
nTPM: 73.5
2140 Male, age 76, both hemispheres 78.7
2053 Male, age 18, unknown 74.8
2272 Male, age 74, both hemispheres 66.9
Pretectal area
nTPM: 73.1
2667 Female, age 75, unknown 80.7
2273 Male, age 74, both hemispheres 79.3
2224 Female, age 72, unknown 78.6
2316 Male, age 76, right hemisphere 74.4
2825 Male, age 18, unknown 74.3
1815 Male, age 53, unknown 73.8
2407 Male, age 75, both hemispheres 71.1
1817 Female, age 42, unknown 69.1
1944 Female, age 72, unknown 67.8
2007 Male, age 72, unknown 67.8
1816 Male, age 51, unknown 67.0
Red nucleus
nTPM: 83.6
1821 Female, age 72, unknown 92.8
1954 Female, age 42, unknown 90.4
2503 Female, age 72, unknown 89.7
1865 Male, age 51, unknown 87.1
1904 Male, age 53, unknown 84.8
2823 Male, age 76, right hemisphere 83.0
2588 Male, age 74, left hemisphere 82.4
2227 Male, age 72, unknown 80.9
2769 Male, age 72, unknown 80.9
2725 Female, age 75, unknown 79.5
2584 Male, age 75, left hemisphere 76.8
2785 Male, age 18, unknown 75.1
Substantia nigra
nTPM: 81.1
2241 Male, age 72, unknown 100.0
1916 Female, age 42, unknown 86.7
1941 Male, age 53, unknown 86.6
2699 Male, age 18, unknown 83.1
2409 Female, age 72, unknown 82.8
1851 Male, age 51, unknown 80.1
1889 Female, age 72, unknown 79.2
2590 Female, age 75, unknown 75.3
2583 Male, age 75, right hemisphere 72.8
2665 Male, age 74, both hemispheres 64.8
Superior colliculus
nTPM: 71.1
2587 Male, age 74, left hemisphere 86.5
1895 Male, age 76, right hemisphere 81.4
1839 Male, age 51, unknown 73.4
2668 Female, age 75, unknown 73.0
1913 Female, age 42, unknown 71.3
1995 Male, age 72, unknown 70.4
2261 Male, age 18, unknown 66.6
1796 Male, age 53, unknown 65.6
2087 Female, age 72, unknown 63.1
2664 Male, age 75, both hemispheres 59.5
Ventral tegmental area
nTPM: 80.8
2410 Female, age 72, unknown 85.4
2223 Female, age 72, unknown 85.1
1915 Female, age 42, unknown 81.6
1942 Male, age 51, unknown 81.1
2218 Male, age 76, both hemispheres 79.7
2021 Male, age 53, unknown 71.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 50.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 50.3
Samples: 139

Max nTPM: 110.3
Min nTPM: 32.4
Std nTPM: 13.4
Median nTPM: 47.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 110.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 105.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 102.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 89.4
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 84.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 80.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 77.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 77.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 76.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 74.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 73.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 251.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 251.0
FF:10158-103A5 76 years, female 251.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 92.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 87.6
Samples: 4

Max nTPM: 96.1
Min nTPM: 76.4
Sample A Female 96.1
Sample B Female 76.4
Sample C Male 90.3
Sample D Male 87.5
Midbrain
nTPM: 92.8
Samples: 4

Max nTPM: 102.2
Min nTPM: 84.7
Sample A Female 102.2
Sample B Female 96.5
Sample C Male 84.7
Sample D Male 87.8
Periaqueductal gray
nTPM: 87.7
Samples: 3

Max nTPM: 90.9
Min nTPM: 85.2
Sample B Female 85.2
Sample C Male 87.0
Sample D Male 90.9
Superior colliculi
nTPM: 87.7
Samples: 4

Max nTPM: 92.6
Min nTPM: 78.7
Sample A Female 88.7
Sample B Female 78.7
Sample C Male 90.8
Sample D Male 92.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 77.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 77.5
Samples: 4

Max nTPM: 82.2
Min nTPM: 69.7
Sample A Male 69.7
Sample B Male 80.1
Sample C Female 82.2
Sample D Female 78.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.8
69838756 Antisense, RP_050324_01_G08, Mouse strain C57BL/6J (56 days, male) 11.5
75931607 Antisense, RP_060606_01_D05, Mouse strain C57BL/6J (56 days, male) 0.1

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