MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.0 nTPM
HPA Brain:90.9 nTPM
GTEx:20.0 nTPM
FANTOM5:50.7 Scaled Tags Per Million
Pig:39.2 nTPM
Mouse:4.6 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 90.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 48.2
2828 Female, age 72, unknown 72.9
2586 Male, age 75, left hemisphere 63.4
1870 Female, age 42, unknown 62.3
1827 Male, age 72, unknown 52.6
2666 Male, age 74, left hemisphere 49.8
1833 Male, age 53, unknown 44.8
1830 Male, age 51, unknown 40.8
2411 Female, age 72, unknown 40.1
2219 Male, age 76, both hemispheres 31.3
2019 Male, age 18, unknown 24.4
Dorsal raphe nucleus
nTPM: 72.0
2016 Female, age 72, unknown 97.1
1828 Male, age 53, unknown 80.4
2298 Female, age 72, unknown 76.7
2047 Male, age 72, unknown 66.0
2750 Male, age 76, both hemispheres 39.9
Inferior colliculus
nTPM: 65.3
1848 Female, age 42, unknown 73.6
2849 Male, age 72, unknown 71.4
2097 Female, age 72, unknown 64.8
1890 Male, age 53, unknown 51.3
Median raphe nucleus
nTPM: 41.8
2220 Male, age 76, midline 41.8
Periaquaductal grey, anterior
nTPM: 69.2
1795 Male, age 51, unknown 79.0
2502 Female, age 75, unknown 65.9
1947 Male, age 18, unknown 62.7
Periaquaductal grey, dorsal
nTPM: 89.2
1840 Male, age 53, unknown 108.2
2850 Male, age 76, both hemispheres 91.7
1831 Male, age 72, unknown 87.9
2464 Female, age 72, unknown 69.0
Periaquaductal grey, lateral
nTPM: 90.9
2053 Male, age 18, unknown 127.1
2140 Male, age 76, both hemispheres 85.1
2272 Male, age 74, both hemispheres 60.6
Pretectal area
nTPM: 62.4
2273 Male, age 74, both hemispheres 87.7
2224 Female, age 72, unknown 83.6
2825 Male, age 18, unknown 83.3
1944 Female, age 72, unknown 66.4
2667 Female, age 75, unknown 63.9
2316 Male, age 76, right hemisphere 62.4
1816 Male, age 51, unknown 58.8
2407 Male, age 75, both hemispheres 52.7
1815 Male, age 53, unknown 51.3
1817 Female, age 42, unknown 45.4
2007 Male, age 72, unknown 31.1
Red nucleus
nTPM: 41.7
2823 Male, age 76, right hemisphere 55.0
2503 Female, age 72, unknown 54.2
2725 Female, age 75, unknown 53.7
1821 Female, age 72, unknown 47.7
2769 Male, age 72, unknown 46.6
1954 Female, age 42, unknown 43.9
2227 Male, age 72, unknown 40.5
1904 Male, age 53, unknown 38.0
1865 Male, age 51, unknown 33.4
2588 Male, age 74, left hemisphere 32.4
2584 Male, age 75, left hemisphere 30.1
2785 Male, age 18, unknown 25.0
Substantia nigra
nTPM: 51.9
2699 Male, age 18, unknown 86.2
1916 Female, age 42, unknown 57.8
1851 Male, age 51, unknown 50.7
2241 Male, age 72, unknown 50.7
2665 Male, age 74, both hemispheres 49.8
2409 Female, age 72, unknown 48.4
1889 Female, age 72, unknown 47.1
2590 Female, age 75, unknown 46.0
1941 Male, age 53, unknown 43.4
2583 Male, age 75, right hemisphere 39.0
Superior colliculus
nTPM: 64.1
1995 Male, age 72, unknown 88.0
2664 Male, age 75, both hemispheres 74.9
1839 Male, age 51, unknown 70.3
1796 Male, age 53, unknown 68.3
1913 Female, age 42, unknown 65.0
2587 Male, age 74, left hemisphere 61.6
2087 Female, age 72, unknown 60.4
2261 Male, age 18, unknown 60.1
2668 Female, age 75, unknown 51.5
1895 Male, age 76, right hemisphere 41.0
Ventral tegmental area
nTPM: 57.9
2021 Male, age 53, unknown 69.5
1915 Female, age 42, unknown 68.5
1942 Male, age 51, unknown 62.3
2410 Female, age 72, unknown 53.4
2218 Male, age 76, both hemispheres 47.7
2223 Female, age 72, unknown 46.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 20.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.0
Samples: 139

Max nTPM: 56.2
Min nTPM: 1.8
Std nTPM: 9.8
Median nTPM: 18.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 56.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 48.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 45.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 44.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 42.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 42.1
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 38.7
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 38.7
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 38.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 38.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 36.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 50.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 50.7
FF:10158-103A5 76 years, female 50.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 39.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.4
Samples: 4

Max nTPM: 25.0
Min nTPM: 20.8
Sample A Female 25.0
Sample B Female 23.0
Sample C Male 20.8
Sample D Male 24.8
Midbrain
nTPM: 25.9
Samples: 4

Max nTPM: 54.9
Min nTPM: 13.0
Sample A Female 54.9
Sample B Female 21.2
Sample C Male 14.6
Sample D Male 13.0
Periaqueductal gray
nTPM: 39.2
Samples: 3

Max nTPM: 47.2
Min nTPM: 33.0
Sample B Female 33.0
Sample C Male 37.5
Sample D Male 47.2
Superior colliculi
nTPM: 14.7
Samples: 4

Max nTPM: 17.1
Min nTPM: 12.7
Sample A Female 14.2
Sample B Female 14.6
Sample C Male 12.7
Sample D Male 17.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 4.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.6
Samples: 4

Max nTPM: 5.0
Min nTPM: 3.9
Sample A Male 4.9
Sample B Male 5.0
Sample C Female 3.9
Sample D Female 4.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
68744456 Antisense, RP_050203_02_H11, Mouse strain C57BL/6J (56 days, male) 0.3

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