MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.1 nTPM
HPA Brain:18.4 nTPM
GTEx:19.1 nTPM
FANTOM5:28.0 Scaled Tags Per Million
Pig:39.2 nTPM
Mouse:11.2 nTPM
Allen mouse:8.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 18.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.1
2586 Male, age 75, left hemisphere 27.1
2828 Female, age 72, unknown 19.2
2019 Male, age 18, unknown 17.1
1870 Female, age 42, unknown 16.0
2411 Female, age 72, unknown 15.2
1827 Male, age 72, unknown 14.5
1833 Male, age 53, unknown 11.4
2666 Male, age 74, left hemisphere 11.0
1830 Male, age 51, unknown 10.0
2219 Male, age 76, both hemispheres 9.5
Dorsal raphe nucleus
nTPM: 17.4
2298 Female, age 72, unknown 21.1
2016 Female, age 72, unknown 19.2
1828 Male, age 53, unknown 17.5
2750 Male, age 76, both hemispheres 17.2
2047 Male, age 72, unknown 11.7
Inferior colliculus
nTPM: 14.8
2097 Female, age 72, unknown 18.7
1890 Male, age 53, unknown 17.0
1848 Female, age 42, unknown 12.5
2849 Male, age 72, unknown 11.1
Median raphe nucleus
nTPM: 9.9
2220 Male, age 76, midline 9.9
Periaquaductal grey, anterior
nTPM: 15.5
1795 Male, age 51, unknown 17.1
2502 Female, age 75, unknown 15.4
1947 Male, age 18, unknown 14.0
Periaquaductal grey, dorsal
nTPM: 14.3
1840 Male, age 53, unknown 15.8
2464 Female, age 72, unknown 14.1
1831 Male, age 72, unknown 13.7
2850 Male, age 76, both hemispheres 13.5
Periaquaductal grey, lateral
nTPM: 14.7
2053 Male, age 18, unknown 16.3
2272 Male, age 74, both hemispheres 16.1
2140 Male, age 76, both hemispheres 11.8
Pretectal area
nTPM: 18.4
1816 Male, age 51, unknown 25.0
1817 Female, age 42, unknown 21.5
1944 Female, age 72, unknown 21.1
2007 Male, age 72, unknown 20.8
2273 Male, age 74, both hemispheres 18.4
2667 Female, age 75, unknown 18.3
2407 Male, age 75, both hemispheres 17.8
1815 Male, age 53, unknown 17.5
2224 Female, age 72, unknown 15.5
2825 Male, age 18, unknown 13.8
2316 Male, age 76, right hemisphere 12.8
Red nucleus
nTPM: 16.4
1821 Female, age 72, unknown 22.1
1865 Male, age 51, unknown 19.5
2227 Male, age 72, unknown 19.3
2785 Male, age 18, unknown 18.9
2503 Female, age 72, unknown 18.3
2725 Female, age 75, unknown 17.7
2769 Male, age 72, unknown 16.8
2584 Male, age 75, left hemisphere 16.4
1904 Male, age 53, unknown 14.4
1954 Female, age 42, unknown 12.5
2823 Male, age 76, right hemisphere 11.8
2588 Male, age 74, left hemisphere 9.8
Substantia nigra
nTPM: 17.5
2409 Female, age 72, unknown 32.6
2583 Male, age 75, right hemisphere 19.2
1916 Female, age 42, unknown 18.4
2241 Male, age 72, unknown 17.7
1851 Male, age 51, unknown 17.5
1889 Female, age 72, unknown 17.1
2699 Male, age 18, unknown 14.9
2590 Female, age 75, unknown 14.3
1941 Male, age 53, unknown 14.1
2665 Male, age 74, both hemispheres 8.9
Superior colliculus
nTPM: 17.1
1995 Male, age 72, unknown 21.3
1796 Male, age 53, unknown 20.8
2087 Female, age 72, unknown 20.5
2668 Female, age 75, unknown 17.7
2261 Male, age 18, unknown 17.5
2664 Male, age 75, both hemispheres 17.2
1913 Female, age 42, unknown 15.6
1839 Male, age 51, unknown 15.0
2587 Male, age 74, left hemisphere 14.3
1895 Male, age 76, right hemisphere 11.2
Ventral tegmental area
nTPM: 14.9
1915 Female, age 42, unknown 19.6
2223 Female, age 72, unknown 17.8
2021 Male, age 53, unknown 15.2
2410 Female, age 72, unknown 12.9
1942 Male, age 51, unknown 12.0
2218 Male, age 76, both hemispheres 11.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 19.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.1
Samples: 139

Max nTPM: 44.0
Min nTPM: 8.6
Std nTPM: 5.2
Median nTPM: 18.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 44.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 35.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 32.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 32.6
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 30.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 30.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 29.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 28.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 27.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 27.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 27.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.0
FF:10158-103A5 76 years, female 28.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 39.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 35.0
Samples: 4

Max nTPM: 42.6
Min nTPM: 25.9
Sample A Female 38.1
Sample B Female 25.9
Sample C Male 33.4
Sample D Male 42.6
Midbrain
nTPM: 39.2
Samples: 4

Max nTPM: 76.3
Min nTPM: 22.9
Sample A Female 76.3
Sample B Female 32.1
Sample C Male 25.5
Sample D Male 22.9
Periaqueductal gray
nTPM: 24.7
Samples: 3

Max nTPM: 26.7
Min nTPM: 23.1
Sample B Female 26.7
Sample C Male 23.1
Sample D Male 24.3
Superior colliculi
nTPM: 29.1
Samples: 4

Max nTPM: 31.1
Min nTPM: 23.8
Sample A Female 31.0
Sample B Female 23.8
Sample C Male 31.1
Sample D Male 30.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 11.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.2
Samples: 4

Max nTPM: 12.2
Min nTPM: 9.8
Sample A Male 12.2
Sample B Male 9.8
Sample C Female 11.1
Sample D Female 11.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.1
576436 Antisense, RP_040826_01_H12, Mouse strain C57BL/6J (56 days, male) 15.2
81599662 Antisense, RP_071213_04_B06, Mouse strain C57BL/6J (56 days, male) 1.0

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