HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni
Consensus:14.1 nTPM
HPA Brain:34.0 nTPM
GTEx:14.1 nTPM
FANTOM5:38.4 Scaled Tags Per Million
Pig:52.0 nTPM
Mouse:14.2 nTPM
Allen mouse:16.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA022120
Glial cells Low
Neuronal cells Not detected


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 34.0
Sample id Sample description nTPM
Hippocampus
nTPM: 31.1
2621 Female, age 67, right hemisphere 36.8
2148 Female, age 91, left hemisphere 34.5
2529 Female, age 94, left hemisphere 33.7
1911 Female, age 85, right hemisphere 31.2
1855 Male, age 76, left hemisphere 26.2
1898 Male, age 80, left hemisphere 24.3
Dentate gyrus
nTPM: 33.1
2531 Female, age 67, both hemispheres 43.8
2246 Female, age 85, both hemispheres 33.2
2010 Male, age 76, both hemispheres 30.6
2528 Male, age 74, both hemispheres 30.5
2530 Female, age 94, left hemisphere 30.5
1927 Female, age 91, both hemispheres 30.1
Entorhinal gyrus
nTPM: 31.6
2117 Female, age 91, right hemisphere 36.4
2686 Male, age 75, right hemisphere 33.7
2613 Female, age 94, left hemisphere 32.9
1787 Male, age 76, left hemisphere 30.2
2764 Male, age 80, right hemisphere 28.9
1938 Female, age 85, left hemisphere 27.6
Hippocampus, CA1
nTPM: 30.4
2527 Male, age 74, both hemispheres 34.3
2082 Female, age 91, right hemisphere 34.0
1873 Female, age 85, both hemispheres 31.4
2045 Male, age 76, both hemispheres 28.1
2749 Male, age 80, left hemisphere 24.1
Hippocampus, CA2
nTPM: 28.6
2113 Female, age 91, right hemisphere 33.6
1963 Male, age 80, left hemisphere 31.1
1940 Female, age 85, left hemisphere 30.2
2437 Female, age 94, left hemisphere 28.7
2249 Male, age 74, both hemispheres 26.0
1892 Male, age 76, both hemispheres 22.2
Hippocampus, CA3
nTPM: 31.8
2861 Female, age 67, both hemispheres 40.1
2620 Female, age 94, left hemisphere 35.5
1891 Female, age 85, both hemispheres 32.5
1867 Male, age 76, both hemispheres 28.6
2436 Male, age 74, both hemispheres 27.9
2137 Male, age 80, left hemisphere 26.0
Parahippocampal cortex
nTPM: 32.4
2622 Female, age 67, right hemisphere 39.6
2692 Male, age 74, both hemispheres 37.7
2245 Female, age 91, both hemispheres 32.9
2693 Female, age 94, both hemispheres 32.8
2018 Male, age 76, both hemispheres 32.2
2532 Female, age 72, left hemisphere 32.2
1990 Female, age 91, right hemisphere 30.3
1850 Male, age 80, both hemispheres 30.0
1933 Female, age 85, both hemispheres 28.6
2250 Female, age 67, right hemisphere 27.3
Perirhinal gyrus
nTPM: 28.2
2848 Male, age 76, right hemisphere 33.2
1841 Female, age 85, right hemisphere 30.4
2521 Female, age 94, right hemisphere 26.1
1847 Female, age 91, left hemisphere 25.8
1794 Male, age 80, right hemisphere 25.7
Subiculum
nTPM: 34.0
2042 Male, age 76, both hemispheres 37.7
2619 Male, age 74, both hemispheres 35.7
2438 Female, age 94, left hemisphere 35.6
2729 Female, age 91, right hemisphere 33.9
1901 Male, age 80, both hemispheres 32.0
1977 Female, age 85, both hemispheres 29.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 14.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 14.1
Samples: 197

Max nTPM: 36.0
Min nTPM: 0.4
Std nTPM: 6.0
Median nTPM: 13.3
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 36.0
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 31.2
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 28.9
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 27.5
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 26.9
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 26.8
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 26.7
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 26.4
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 25.7
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 25.2
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 25.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 38.4
FF:10153-102I9 76 years, female 39.5
FF:10169-103B7 60 years, female 37.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 52.0
Pig sample Sample description nTPM
Subiculum
nTPM: 51.5
Samples: 4

Max nTPM: 54.8
Min nTPM: 49.9
Sample A Female 51.0
Sample B Female 49.9
Sample C Male 50.2
Sample D Male 54.8
Dorsal hippocampus
nTPM: 49.1
Samples: 4

Max nTPM: 55.4
Min nTPM: 40.8
Sample A Female 40.8
Sample B Female 45.8
Sample C Male 54.2
Sample D Male 55.4
Entorhinal cortex
nTPM: 52.0
Samples: 4

Max nTPM: 57.0
Min nTPM: 47.8
Sample A Female 47.8
Sample B Female 55.3
Sample C Male 47.9
Sample D Male 57.0
Ventral hippocampus
nTPM: 47.0
Samples: 4

Max nTPM: 56.0
Min nTPM: 33.2
Sample A Female 49.3
Sample B Female 56.0
Sample C Male 33.2
Sample D Male 49.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 14.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 13.4
Samples: 4

Max nTPM: 15.6
Min nTPM: 10.8
Sample A Male 11.9
Sample B Male 15.6
Sample C Female 15.2
Sample D Female 10.8
Hippocampal formation
nTPM: 14.2
Samples: 4

Max nTPM: 16.0
Min nTPM: 11.2
Sample A Male 16.0
Sample B Male 15.8
Sample C Female 11.2
Sample D Female 13.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 16.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 16.8
73423868 Antisense, RP_051019_03_B01, Mouse strain C57BL/6J (56 days, male) 16.8

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