MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:44.8 nTPM
HPA Brain:148.9 nTPM
GTEx:44.8 nTPM
FANTOM5:126.7 Scaled Tags Per Million
Pig:69.3 nTPM
Mouse:59.6 nTPM
Allen mouse:11.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 148.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 139.6
2586 Male, age 75, left hemisphere 225.3
2666 Male, age 74, left hemisphere 177.3
2828 Female, age 72, unknown 155.2
1827 Male, age 72, unknown 139.8
1833 Male, age 53, unknown 130.5
2019 Male, age 18, unknown 122.6
1870 Female, age 42, unknown 118.2
1830 Male, age 51, unknown 116.2
2219 Male, age 76, both hemispheres 106.9
2411 Female, age 72, unknown 103.9
Dorsal raphe nucleus
nTPM: 125.4
2047 Male, age 72, unknown 147.0
1828 Male, age 53, unknown 128.5
2750 Male, age 76, both hemispheres 118.3
2298 Female, age 72, unknown 117.8
2016 Female, age 72, unknown 115.3
Inferior colliculus
nTPM: 120.8
2849 Male, age 72, unknown 137.6
1890 Male, age 53, unknown 127.0
1848 Female, age 42, unknown 119.4
2097 Female, age 72, unknown 99.4
Median raphe nucleus
nTPM: 129.3
2220 Male, age 76, midline 129.3
Periaquaductal grey, anterior
nTPM: 138.9
1947 Male, age 18, unknown 152.1
1795 Male, age 51, unknown 143.0
2502 Female, age 75, unknown 121.5
Periaquaductal grey, dorsal
nTPM: 127.5
2850 Male, age 76, both hemispheres 162.0
1840 Male, age 53, unknown 126.0
1831 Male, age 72, unknown 120.3
2464 Female, age 72, unknown 101.5
Periaquaductal grey, lateral
nTPM: 123.1
2140 Male, age 76, both hemispheres 144.7
2053 Male, age 18, unknown 123.9
2272 Male, age 74, both hemispheres 100.7
Pretectal area
nTPM: 131.2
1816 Male, age 51, unknown 174.8
1817 Female, age 42, unknown 162.1
1815 Male, age 53, unknown 142.9
2007 Male, age 72, unknown 138.3
1944 Female, age 72, unknown 135.7
2825 Male, age 18, unknown 129.3
2667 Female, age 75, unknown 124.4
2407 Male, age 75, both hemispheres 122.4
2316 Male, age 76, right hemisphere 113.3
2224 Female, age 72, unknown 110.9
2273 Male, age 74, both hemispheres 89.2
Red nucleus
nTPM: 126.2
2584 Male, age 75, left hemisphere 150.1
2588 Male, age 74, left hemisphere 145.1
2725 Female, age 75, unknown 138.7
1821 Female, age 72, unknown 127.7
2785 Male, age 18, unknown 124.0
2823 Male, age 76, right hemisphere 123.3
1954 Female, age 42, unknown 121.2
1865 Male, age 51, unknown 120.3
1904 Male, age 53, unknown 119.0
2503 Female, age 72, unknown 116.7
2769 Male, age 72, unknown 116.1
2227 Male, age 72, unknown 112.6
Substantia nigra
nTPM: 148.9
2665 Male, age 74, both hemispheres 199.4
2583 Male, age 75, right hemisphere 166.1
1916 Female, age 42, unknown 162.0
1851 Male, age 51, unknown 146.9
2699 Male, age 18, unknown 144.1
2241 Male, age 72, unknown 142.5
1889 Female, age 72, unknown 140.4
1941 Male, age 53, unknown 136.2
2590 Female, age 75, unknown 130.5
2409 Female, age 72, unknown 121.1
Superior colliculus
nTPM: 127.2
2664 Male, age 75, both hemispheres 158.7
2668 Female, age 75, unknown 153.0
2261 Male, age 18, unknown 129.5
1796 Male, age 53, unknown 129.3
2087 Female, age 72, unknown 127.8
2587 Male, age 74, left hemisphere 126.1
1839 Male, age 51, unknown 116.5
1913 Female, age 42, unknown 115.1
1995 Male, age 72, unknown 110.8
1895 Male, age 76, right hemisphere 105.4
Ventral tegmental area
nTPM: 128.1
1915 Female, age 42, unknown 138.7
2410 Female, age 72, unknown 138.3
2218 Male, age 76, both hemispheres 134.0
2021 Male, age 53, unknown 122.9
1942 Male, age 51, unknown 121.2
2223 Female, age 72, unknown 113.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 44.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 44.8
Samples: 139

Max nTPM: 81.0
Min nTPM: 23.6
Std nTPM: 9.1
Median nTPM: 44.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 81.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 65.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 64.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 63.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 62.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 61.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 61.3
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 60.3
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 58.8
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 58.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 58.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 126.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 126.7
FF:10158-103A5 76 years, female 126.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 69.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 68.2
Samples: 4

Max nTPM: 73.8
Min nTPM: 62.2
Sample A Female 72.0
Sample B Female 62.2
Sample C Male 73.8
Sample D Male 64.7
Midbrain
nTPM: 68.4
Samples: 4

Max nTPM: 84.8
Min nTPM: 54.9
Sample A Female 84.8
Sample B Female 54.9
Sample C Male 75.2
Sample D Male 58.8
Periaqueductal gray
nTPM: 57.9
Samples: 3

Max nTPM: 66.1
Min nTPM: 53.0
Sample B Female 54.6
Sample C Male 66.1
Sample D Male 53.0
Superior colliculi
nTPM: 69.3
Samples: 4

Max nTPM: 72.0
Min nTPM: 65.5
Sample A Female 69.0
Sample B Female 72.0
Sample C Male 70.8
Sample D Male 65.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 59.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 59.6
Samples: 4

Max nTPM: 62.9
Min nTPM: 56.1
Sample A Male 56.1
Sample B Male 58.3
Sample C Female 62.9
Sample D Female 61.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.5
69261403 Antisense, RP_050118_01_D03, Mouse strain C57BL/6J (56 days, male) 11.8
70920063 Antisense, RP_050713_02_F03, Mouse strain C57BL/6J (56 days, male) 11.3

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