HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:55.0 nTPM
HPA Brain:59.6 nTPM
GTEx:55.0 nTPM
FANTOM5:24.7 Scaled Tags Per Million
Pig:32.0 nTPM
Mouse:153.4 nTPM
Allen mouse:21.9 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 59.6
Sample id Sample description nTPM
Hippocampus
nTPM: 52.3
1898 Male, age 80, left hemisphere 67.3
2148 Female, age 91, left hemisphere 56.0
2621 Female, age 67, right hemisphere 52.7
1855 Male, age 76, left hemisphere 51.8
1911 Female, age 85, right hemisphere 43.4
2529 Female, age 94, left hemisphere 42.3
Dentate gyrus
nTPM: 56.6
2530 Female, age 94, left hemisphere 72.1
1927 Female, age 91, both hemispheres 65.1
2528 Male, age 74, both hemispheres 53.8
2531 Female, age 67, both hemispheres 52.5
2010 Male, age 76, both hemispheres 50.9
2246 Female, age 85, both hemispheres 45.4
Entorhinal gyrus
nTPM: 55.1
2613 Female, age 94, left hemisphere 69.7
2764 Male, age 80, right hemisphere 58.9
1787 Male, age 76, left hemisphere 57.0
2686 Male, age 75, right hemisphere 52.2
1938 Female, age 85, left hemisphere 48.3
2117 Female, age 91, right hemisphere 44.4
Hippocampus, CA1
nTPM: 55.5
2749 Male, age 80, left hemisphere 78.3
1873 Female, age 85, both hemispheres 55.4
2082 Female, age 91, right hemisphere 52.1
2527 Male, age 74, both hemispheres 46.6
2045 Male, age 76, both hemispheres 45.0
Hippocampus, CA2
nTPM: 59.6
1963 Male, age 80, left hemisphere 74.1
1892 Male, age 76, both hemispheres 69.0
2437 Female, age 94, left hemisphere 61.2
1940 Female, age 85, left hemisphere 54.0
2249 Male, age 74, both hemispheres 49.9
2113 Female, age 91, right hemisphere 49.2
Hippocampus, CA3
nTPM: 55.4
2861 Female, age 67, both hemispheres 61.3
2137 Male, age 80, left hemisphere 60.2
2620 Female, age 94, left hemisphere 58.4
2436 Male, age 74, both hemispheres 56.0
1867 Male, age 76, both hemispheres 52.3
1891 Female, age 85, both hemispheres 44.4
Parahippocampal cortex
nTPM: 50.8
1850 Male, age 80, both hemispheres 61.0
1990 Female, age 91, right hemisphere 56.0
2622 Female, age 67, right hemisphere 54.2
2532 Female, age 72, left hemisphere 53.9
2693 Female, age 94, both hemispheres 50.9
1933 Female, age 85, both hemispheres 49.9
2245 Female, age 91, both hemispheres 48.1
2018 Male, age 76, both hemispheres 47.5
2692 Male, age 74, both hemispheres 43.8
2250 Female, age 67, right hemisphere 42.5
Perirhinal gyrus
nTPM: 58.8
1794 Male, age 80, right hemisphere 67.9
1847 Female, age 91, left hemisphere 61.4
1841 Female, age 85, right hemisphere 58.8
2521 Female, age 94, right hemisphere 57.4
2848 Male, age 76, right hemisphere 48.4
Subiculum
nTPM: 47.3
1901 Male, age 80, both hemispheres 53.1
1977 Female, age 85, both hemispheres 50.9
2729 Female, age 91, right hemisphere 49.1
2042 Male, age 76, both hemispheres 47.5
2619 Male, age 74, both hemispheres 45.0
2438 Female, age 94, left hemisphere 38.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 55.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 55.0
Samples: 197

Max nTPM: 94.7
Min nTPM: 19.0
Std nTPM: 14.7
Median nTPM: 54.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 94.7
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 94.7
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 93.3
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 91.0
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 90.2
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 89.8
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 88.5
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 86.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 86.7
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 84.3
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 79.8
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 24.7
FF:10153-102I9 76 years, female 30.7
FF:10169-103B7 60 years, female 18.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 32.0
Pig sample Sample description nTPM
Subiculum
nTPM: 28.8
Samples: 4

Max nTPM: 34.7
Min nTPM: 25.7
Sample A Female 34.7
Sample B Female 27.1
Sample C Male 27.8
Sample D Male 25.7
Dorsal hippocampus
nTPM: 29.6
Samples: 4

Max nTPM: 35.5
Min nTPM: 22.3
Sample A Female 35.5
Sample B Female 31.8
Sample C Male 28.8
Sample D Male 22.3
Entorhinal cortex
nTPM: 32.0
Samples: 4

Max nTPM: 35.7
Min nTPM: 27.3
Sample A Female 32.9
Sample B Female 35.7
Sample C Male 32.0
Sample D Male 27.3
Ventral hippocampus
nTPM: 30.3
Samples: 4

Max nTPM: 37.9
Min nTPM: 23.7
Sample A Female 30.0
Sample B Female 23.7
Sample C Male 37.9
Sample D Male 29.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 153.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 153.4
Samples: 4

Max nTPM: 175.2
Min nTPM: 138.7
Sample A Male 154.2
Sample B Male 175.2
Sample C Female 138.7
Sample D Female 145.4
Hippocampal formation
nTPM: 145.1
Samples: 4

Max nTPM: 147.2
Min nTPM: 141.1
Sample A Male 146.5
Sample B Male 145.5
Sample C Female 147.2
Sample D Female 141.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 21.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 21.9
70919364 Antisense, RP_050713_01_B09, Mouse strain C57BL/6J (56 days, male) 23.3
68196922 Antisense, RP_041116_01_E10, Mouse strain C57BL/6J (56 days, male) 20.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org