MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.3 nTPM
HPA Brain:49.0 nTPM
GTEx:38.3 nTPM
FANTOM5:29.4 Scaled Tags Per Million
Pig:30.6 nTPM
Mouse:119.1 nTPM
Allen mouse:13.8 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 49.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 48.2
2586 Male, age 75, left hemisphere 63.2
2019 Male, age 18, unknown 58.8
2666 Male, age 74, left hemisphere 51.5
2828 Female, age 72, unknown 50.5
2411 Female, age 72, unknown 49.5
1827 Male, age 72, unknown 48.4
1870 Female, age 42, unknown 46.0
1830 Male, age 51, unknown 40.2
1833 Male, age 53, unknown 39.5
2219 Male, age 76, both hemispheres 34.3
Dorsal raphe nucleus
nTPM: 43.5
2047 Male, age 72, unknown 47.4
2298 Female, age 72, unknown 46.2
1828 Male, age 53, unknown 43.1
2750 Male, age 76, both hemispheres 41.1
2016 Female, age 72, unknown 39.5
Inferior colliculus
nTPM: 45.2
2097 Female, age 72, unknown 51.5
1848 Female, age 42, unknown 44.7
1890 Male, age 53, unknown 44.3
2849 Male, age 72, unknown 40.5
Median raphe nucleus
nTPM: 32.3
2220 Male, age 76, midline 32.3
Periaquaductal grey, anterior
nTPM: 49.0
2502 Female, age 75, unknown 52.9
1795 Male, age 51, unknown 47.1
1947 Male, age 18, unknown 47.1
Periaquaductal grey, dorsal
nTPM: 37.4
2464 Female, age 72, unknown 41.5
1840 Male, age 53, unknown 40.1
1831 Male, age 72, unknown 38.0
2850 Male, age 76, both hemispheres 30.0
Periaquaductal grey, lateral
nTPM: 35.8
2053 Male, age 18, unknown 41.0
2272 Male, age 74, both hemispheres 34.5
2140 Male, age 76, both hemispheres 31.9
Pretectal area
nTPM: 49.0
2007 Male, age 72, unknown 66.1
1816 Male, age 51, unknown 63.7
1817 Female, age 42, unknown 56.6
1944 Female, age 72, unknown 52.5
1815 Male, age 53, unknown 51.2
2407 Male, age 75, both hemispheres 50.8
2667 Female, age 75, unknown 43.8
2825 Male, age 18, unknown 39.6
2273 Male, age 74, both hemispheres 39.0
2316 Male, age 76, right hemisphere 38.2
2224 Female, age 72, unknown 37.5
Red nucleus
nTPM: 44.9
2785 Male, age 18, unknown 56.8
2584 Male, age 75, left hemisphere 56.5
2588 Male, age 74, left hemisphere 47.7
1821 Female, age 72, unknown 46.1
2769 Male, age 72, unknown 43.1
1865 Male, age 51, unknown 42.9
2227 Male, age 72, unknown 42.8
2725 Female, age 75, unknown 41.6
1954 Female, age 42, unknown 41.5
2823 Male, age 76, right hemisphere 40.1
2503 Female, age 72, unknown 39.7
1904 Male, age 53, unknown 39.6
Substantia nigra
nTPM: 41.6
2583 Male, age 75, right hemisphere 56.1
1889 Female, age 72, unknown 47.8
2665 Male, age 74, both hemispheres 46.8
1941 Male, age 53, unknown 44.5
1851 Male, age 51, unknown 42.7
2590 Female, age 75, unknown 40.7
1916 Female, age 42, unknown 38.9
2409 Female, age 72, unknown 36.5
2241 Male, age 72, unknown 34.4
2699 Male, age 18, unknown 28.0
Superior colliculus
nTPM: 48.6
2664 Male, age 75, both hemispheres 59.7
2668 Female, age 75, unknown 53.0
1796 Male, age 53, unknown 51.3
2087 Female, age 72, unknown 50.9
2261 Male, age 18, unknown 49.0
1895 Male, age 76, right hemisphere 48.3
1913 Female, age 42, unknown 43.8
1995 Male, age 72, unknown 43.8
2587 Male, age 74, left hemisphere 43.2
1839 Male, age 51, unknown 42.9
Ventral tegmental area
nTPM: 38.5
2410 Female, age 72, unknown 41.3
2021 Male, age 53, unknown 40.2
1942 Male, age 51, unknown 39.8
1915 Female, age 42, unknown 39.1
2223 Female, age 72, unknown 38.5
2218 Male, age 76, both hemispheres 32.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 38.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.3
Samples: 139

Max nTPM: 80.2
Min nTPM: 24.6
Std nTPM: 7.3
Median nTPM: 38.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 80.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 54.1
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 51.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 51.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 50.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 50.3
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 49.2
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 49.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 48.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 48.0
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 47.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.4
FF:10158-103A5 76 years, female 29.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 30.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 27.8
Samples: 4

Max nTPM: 33.4
Min nTPM: 23.7
Sample A Female 33.4
Sample B Female 24.4
Sample C Male 29.7
Sample D Male 23.7
Midbrain
nTPM: 29.9
Samples: 4

Max nTPM: 32.1
Min nTPM: 26.2
Sample A Female 31.1
Sample B Female 26.2
Sample C Male 32.1
Sample D Male 30.0
Periaqueductal gray
nTPM: 24.9
Samples: 3

Max nTPM: 27.3
Min nTPM: 22.4
Sample B Female 25.1
Sample C Male 27.3
Sample D Male 22.4
Superior colliculi
nTPM: 30.6
Samples: 4

Max nTPM: 36.6
Min nTPM: 24.7
Sample A Female 36.6
Sample B Female 24.7
Sample C Male 31.4
Sample D Male 29.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 119.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 119.1
Samples: 4

Max nTPM: 121.9
Min nTPM: 117.7
Sample A Male 118.8
Sample B Male 118.0
Sample C Female 117.7
Sample D Female 121.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.8
70919364 Antisense, RP_050713_01_B09, Mouse strain C57BL/6J (56 days, male) 15.2
68196922 Antisense, RP_041116_01_E10, Mouse strain C57BL/6J (56 days, male) 12.4

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