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                                  BRAIN THALAMUS Show tissue menu
                                  AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
                                  MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
                                  ANTIBODIES
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                                  Brain proteome
                                  Thalamus
                                  THALAMUS - Expression summary
                                  Protein expressioni

                                  On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

                                  Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

                                  If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

                                  No data
                                  RNA expressioni

                                  A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

                                  The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

                                  Scroll down to view mRNA expression data in more detail.
                                  HPA Brain:105.7 nTPM
                                  FANTOM5:118.4 Scaled Tags Per Million
                                  Pig:127.4 nTPM
                                  Mouse:118.1 nTPM
                                  Allen mouse:6.3 Expression energy

                                  THALAMUS - HPA Brain RNA-seq
                                  Max nTPM 105.7
                                  Sample id Sample description nTPM
                                  Anterior thalamic nucleus, ventral
                                  nTPM: 105.7
                                  2396 Male, age 61, right hemisphere 144.9
                                  2032 Female, age 42, unknown 90.9
                                  2497 Male, age 66, unknown 81.2
                                  Centromedial thalamic nucleus
                                  nTPM: 83.4
                                  2401 Male, age 76, right hemisphere 89.7
                                  2279 Female, age 85, left hemisphere 77.1
                                  Habenula
                                  nTPM: 82.7
                                  1957 Male, age 80, both hemispheres 94.5
                                  2203 Male, age 61, left hemisphere 94.0
                                  2276 Male, age 66, unknown 78.3
                                  2252 Male, age 62, unknown 64.0
                                  Lateral geniculate body
                                  nTPM: 95.5
                                  1953 Male, age 62, unknown 123.9
                                  2035 Female, age 72, unknown 103.8
                                  2575 Female, age 94, right hemisphere 99.6
                                  2857 Male, age 74, right hemisphere 91.9
                                  2106 Female, age 67, right hemisphere 91.3
                                  2399 Male, age 61, left hemisphere 86.9
                                  2841 Male, age 80, both hemispheres 84.9
                                  2659 Male, age 66, unknown 81.8
                                  Lateral thalamic nuclei
                                  nTPM: 87.0
                                  2573 Female, age 94, left hemisphere 98.7
                                  2765 Female, age 67, both hemispheres 95.6
                                  2577 Male, age 74, both hemispheres 82.0
                                  1903 Male, age 76, left hemisphere 80.6
                                  2661 Female, age 72, unknown 78.2
                                  Medial dorsal thalamic nucleus
                                  nTPM: 84.9
                                  1971 Male, age 61, right hemisphere 107.9
                                  2572 Female, age 94, right hemisphere 103.4
                                  2498 Male, age 66, unknown 91.0
                                  1810 Male, age 48, unknown 85.2
                                  2039 Female, age 72, unknown 84.8
                                  2576 Male, age 74, both hemispheres 84.6
                                  1930 Female, age 42, unknown 83.3
                                  2492 Male, age 75, right hemisphere 82.3
                                  2026 Male, age 62, unknown 80.9
                                  1859 Male, age 76, both hemispheres 78.9
                                  2660 Female, age 72, unknown 78.1
                                  2402 Female, age 67, both hemispheres 77.9
                                  2283 Male, age 80, right hemisphere 65.1
                                  Medial geniculate body
                                  nTPM: 79.3
                                  1811 Female, age 42, unknown 88.1
                                  2650 Female, age 94, left hemisphere 85.4
                                  2049 Male, age 76, both hemispheres 83.7
                                  2657 Male, age 74, right hemisphere 78.9
                                  2571 Male, age 75, right hemisphere 76.5
                                  2207 Male, age 80, right hemisphere 73.3
                                  2217 Female, age 72, unknown 68.9
                                  Nucleus reuniens
                                  nTPM: 90.8
                                  2212 Female, age 67, left hemisphere 104.9
                                  2210 Female, age 85, left hemisphere 84.7
                                  2205 Male, age 80, left hemisphere 82.9
                                  Nucleus rhomboideus
                                  nTPM: 85.7
                                  2213 Female, age 67, left hemisphere 105.9
                                  2280 Female, age 85, left hemisphere 77.3
                                  2206 Male, age 80, both hemispheres 73.9
                                  Posterior thalamic nucleus
                                  nTPM: 93.1
                                  2649 Female, age 94, both hemispheres 118.0
                                  2266 Male, age 76, right hemisphere 91.1
                                  2655 Male, age 74, right hemisphere 86.2
                                  2495 Female, age 67, right hemisphere 77.2
                                  Pulvinar
                                  nTPM: 83.9
                                  1972 Male, age 62, unknown 100.1
                                  2398 Male, age 61, left hemisphere 94.2
                                  1932 Male, age 80, right hemisphere 86.1
                                  2499 Male, age 66, unknown 85.4
                                  1929 Male, age 48, unknown 85.3
                                  2724 Male, age 74, right hemisphere 83.7
                                  1899 Female, age 42, unknown 78.8
                                  2496 Female, age 67, right hemisphere 77.0
                                  2214 Male, age 76, right hemisphere 76.0
                                  2582 Female, age 72, unknown 72.4
                                  Subthalamic nucleus
                                  nTPM: 87.3
                                  2124 Male, age 62, unknown 106.7
                                  2406 Female, age 72, unknown 98.0
                                  2658 Male, age 74, both hemispheres 96.9
                                  2282 Male, age 61, both hemispheres 88.0
                                  2275 Male, age 66, unknown 85.1
                                  2779 Female, age 42, unknown 80.5
                                  2056 Female, age 72, unknown 74.7
                                  2216 Male, age 48, unknown 68.5
                                  Ventral posterolateral thalamic nucleus
                                  nTPM: 81.6
                                  2397 Male, age 61, right hemisphere 95.3
                                  2740 Male, age 76, right hemisphere 88.0
                                  2570 Male, age 75, right hemisphere 87.0
                                  2197 Male, age 80, both hemispheres 78.5
                                  2578 Male, age 74, both hemispheres 77.8
                                  2581 Female, age 72, unknown 62.8
                                  Ventral posteromedial thalamic nucleus
                                  nTPM: 79.4
                                  2202 Male, age 61, left hemisphere 91.0
                                  2281 Male, age 75, right hemisphere 84.4
                                  2653 Male, age 74, both hemispheres 82.8
                                  2127 Male, age 76, right hemisphere 75.2
                                  2758 Male, age 80, both hemispheres 63.7
                                  Ventral thalamic nuclei
                                  nTPM: 85.3
                                  1845 Male, age 48, unknown 103.4
                                  1860 Male, age 76, both hemispheres 95.4
                                  1912 Female, age 42, unknown 92.9
                                  2580 Male, age 66, unknown 91.1
                                  2291 Female, age 72, unknown 84.3
                                  2652 Male, age 74, left hemisphere 80.3
                                  2858 Female, age 72, unknown 77.2
                                  2285 Male, age 62, unknown 72.9
                                  2204 Male, age 80, both hemispheres 70.5
                                  Zona incerta
                                  nTPM: 81.5
                                  2215 Male, age 66, unknown 93.0
                                  2822 Male, age 74, right hemisphere 86.6
                                  2403 Male, age 62, unknown 82.0
                                  2208 Male, age 80, right hemisphere 75.5
                                  2663 Female, age 72, unknown 70.4

                                  THALAMUS - FANTOM5 CAGEi

                                  RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

                                  Max Scaled Tags Per Million 118.4
                                  FANTOM5 sample id Sample description Scaled Tags Per Million
                                  Thalamus
                                  Scaled Tags Per Million: 118.4
                                  FF:10154-103A1 76 years, female 118.4

                                  THALAMUS - Pig RNA-seqi

                                  RNA-seq data obtained from pig brain is reported as nTPM .

                                  Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
                                  Average nTPM 127.4
                                  Pig sample Sample description nTPM
                                  124.5137.1139.9134.4140.70102030405060708090100110120130140
                                  124.5137.1139.9134.4140.70102030405060708090100110120130140
                                  Thalamus
                                  nTPM: 127.4
                                  Samples: 4

                                  Max nTPM: 140.7
                                  Min nTPM: 94.7
                                  Sample A Female 139.7
                                  Sample B Female 94.7
                                  Sample C Male 140.7
                                  Sample D Male 134.4

                                  THALAMUS - Mouse RNA-seqi

                                  RNA-seq data obtained from mouse brain is reported as nTPM .

                                  Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
                                  Average nTPM 118.1
                                  Mouse sample Sample description nTPM
                                  117.1118.5119.5118.4122.60102030405060708090100110120
                                  117.1118.5119.5118.4122.60102030405060708090100110120
                                  Thalamus
                                  nTPM: 118.1
                                  Samples: 4

                                  Max nTPM: 122.6
                                  Min nTPM: 113.0
                                  Sample A Male 122.6
                                  Sample B Male 118.4
                                  Sample C Female 118.5
                                  Sample D Female 113.0

                                  THALAMUS - Allen Mouse ISHi

                                  In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

                                  Max Expression energy 6.3
                                  Allen experiment id Experiment description Expression energy
                                  Thalamus
                                  Expression energy: 6.3
                                  69514702 Antisense, RP_050419_03_H06, Mouse strain C57BL/6J (56 days, male) 6.3

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