MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.7 nTPM
HPA Brain:35.4 nTPM
GTEx:35.7 nTPM
FANTOM5:50.3 Scaled Tags Per Million
Pig:28.6 nTPM
Mouse:111.7 nTPM
Allen mouse:7.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 35.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.5
2411 Female, age 72, unknown 33.2
1870 Female, age 42, unknown 31.5
1827 Male, age 72, unknown 29.8
2019 Male, age 18, unknown 28.8
1833 Male, age 53, unknown 26.8
1830 Male, age 51, unknown 26.7
2219 Male, age 76, both hemispheres 26.0
2666 Male, age 74, left hemisphere 26.0
2828 Female, age 72, unknown 24.2
2586 Male, age 75, left hemisphere 21.8
Dorsal raphe nucleus
nTPM: 33.5
2298 Female, age 72, unknown 39.2
2750 Male, age 76, both hemispheres 33.5
2047 Male, age 72, unknown 33.4
1828 Male, age 53, unknown 32.8
2016 Female, age 72, unknown 28.6
Inferior colliculus
nTPM: 28.1
2097 Female, age 72, unknown 31.8
1848 Female, age 42, unknown 28.3
1890 Male, age 53, unknown 27.5
2849 Male, age 72, unknown 24.8
Median raphe nucleus
nTPM: 33.5
2220 Male, age 76, midline 33.5
Periaquaductal grey, anterior
nTPM: 28.1
1947 Male, age 18, unknown 32.9
2502 Female, age 75, unknown 26.2
1795 Male, age 51, unknown 25.2
Periaquaductal grey, dorsal
nTPM: 25.5
1840 Male, age 53, unknown 28.9
2850 Male, age 76, both hemispheres 26.0
2464 Female, age 72, unknown 24.4
1831 Male, age 72, unknown 22.8
Periaquaductal grey, lateral
nTPM: 26.0
2053 Male, age 18, unknown 26.6
2140 Male, age 76, both hemispheres 25.7
2272 Male, age 74, both hemispheres 25.7
Pretectal area
nTPM: 29.0
2007 Male, age 72, unknown 32.4
2224 Female, age 72, unknown 31.5
1944 Female, age 72, unknown 31.3
2273 Male, age 74, both hemispheres 30.5
1816 Male, age 51, unknown 30.3
1817 Female, age 42, unknown 28.9
1815 Male, age 53, unknown 28.6
2825 Male, age 18, unknown 28.2
2667 Female, age 75, unknown 27.6
2316 Male, age 76, right hemisphere 26.7
2407 Male, age 75, both hemispheres 23.1
Red nucleus
nTPM: 30.5
1821 Female, age 72, unknown 39.7
2725 Female, age 75, unknown 38.4
1865 Male, age 51, unknown 32.8
2503 Female, age 72, unknown 31.9
1954 Female, age 42, unknown 31.7
1904 Male, age 53, unknown 29.8
2588 Male, age 74, left hemisphere 29.3
2769 Male, age 72, unknown 28.6
2227 Male, age 72, unknown 28.3
2823 Male, age 76, right hemisphere 27.9
2785 Male, age 18, unknown 25.0
2584 Male, age 75, left hemisphere 22.8
Substantia nigra
nTPM: 35.4
1916 Female, age 42, unknown 46.8
2241 Male, age 72, unknown 45.7
1851 Male, age 51, unknown 40.3
2409 Female, age 72, unknown 36.9
1941 Male, age 53, unknown 35.0
1889 Female, age 72, unknown 33.6
2699 Male, age 18, unknown 31.8
2590 Female, age 75, unknown 30.6
2665 Male, age 74, both hemispheres 27.1
2583 Male, age 75, right hemisphere 26.1
Superior colliculus
nTPM: 26.4
2587 Male, age 74, left hemisphere 30.6
1895 Male, age 76, right hemisphere 30.3
2087 Female, age 72, unknown 29.3
1796 Male, age 53, unknown 27.9
2261 Male, age 18, unknown 27.8
1839 Male, age 51, unknown 26.6
2668 Female, age 75, unknown 26.0
1913 Female, age 42, unknown 23.5
1995 Male, age 72, unknown 22.7
2664 Male, age 75, both hemispheres 19.0
Ventral tegmental area
nTPM: 32.9
1915 Female, age 42, unknown 40.2
2410 Female, age 72, unknown 35.9
2218 Male, age 76, both hemispheres 34.9
2223 Female, age 72, unknown 30.2
2021 Male, age 53, unknown 28.8
1942 Male, age 51, unknown 27.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 35.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.7
Samples: 139

Max nTPM: 56.8
Min nTPM: 23.7
Std nTPM: 6.5
Median nTPM: 34.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 56.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 55.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 55.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 53.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 52.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 51.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 50.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 48.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 48.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 46.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 45.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 50.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 50.3
FF:10158-103A5 76 years, female 50.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 28.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 27.0
Samples: 4

Max nTPM: 34.1
Min nTPM: 20.7
Sample A Female 34.1
Sample B Female 24.6
Sample C Male 28.7
Sample D Male 20.7
Midbrain
nTPM: 28.6
Samples: 4

Max nTPM: 29.3
Min nTPM: 27.9
Sample A Female 28.7
Sample B Female 27.9
Sample C Male 28.3
Sample D Male 29.3
Periaqueductal gray
nTPM: 23.9
Samples: 3

Max nTPM: 27.3
Min nTPM: 21.6
Sample B Female 21.6
Sample C Male 27.3
Sample D Male 22.7
Superior colliculi
nTPM: 28.3
Samples: 4

Max nTPM: 31.8
Min nTPM: 23.9
Sample A Female 31.4
Sample B Female 23.9
Sample C Male 31.8
Sample D Male 26.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 111.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 111.8
Samples: 4

Max nTPM: 115.1
Min nTPM: 108.6
Sample A Male 115.1
Sample B Male 108.6
Sample C Female 110.0
Sample D Female 113.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.4
69080012 Antisense, RP_050324_01_D01, Mouse strain C57BL/6J (56 days, male) 7.4

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