MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1344.8 nTPM
HPA Brain:539.0 nTPM
GTEx:1344.8 nTPM
FANTOM5:53.8 Scaled Tags Per Million
Mouse:1259.6 nTPM
Allen mouse:5.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 539.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 518.4
2586 Male, age 75, left hemisphere 715.4
2828 Female, age 72, unknown 550.2
2666 Male, age 74, left hemisphere 547.9
1870 Female, age 42, unknown 515.3
2019 Male, age 18, unknown 508.6
1833 Male, age 53, unknown 481.0
1827 Male, age 72, unknown 479.7
1830 Male, age 51, unknown 475.4
2411 Female, age 72, unknown 475.0
2219 Male, age 76, both hemispheres 435.7
Dorsal raphe nucleus
nTPM: 486.7
2750 Male, age 76, both hemispheres 529.8
2298 Female, age 72, unknown 524.0
2016 Female, age 72, unknown 485.2
1828 Male, age 53, unknown 452.6
2047 Male, age 72, unknown 441.7
Inferior colliculus
nTPM: 478.3
1890 Male, age 53, unknown 503.6
2849 Male, age 72, unknown 500.7
1848 Female, age 42, unknown 458.7
2097 Female, age 72, unknown 450.1
Median raphe nucleus
nTPM: 485.4
2220 Male, age 76, midline 485.4
Periaquaductal grey, anterior
nTPM: 539.0
2502 Female, age 75, unknown 607.6
1795 Male, age 51, unknown 537.1
1947 Male, age 18, unknown 472.2
Periaquaductal grey, dorsal
nTPM: 456.3
1840 Male, age 53, unknown 505.6
2850 Male, age 76, both hemispheres 468.8
1831 Male, age 72, unknown 442.0
2464 Female, age 72, unknown 408.6
Periaquaductal grey, lateral
nTPM: 445.5
2053 Male, age 18, unknown 457.6
2140 Male, age 76, both hemispheres 449.0
2272 Male, age 74, both hemispheres 429.9
Pretectal area
nTPM: 480.1
2007 Male, age 72, unknown 565.8
1817 Female, age 42, unknown 543.9
1816 Male, age 51, unknown 525.0
1815 Male, age 53, unknown 494.1
2316 Male, age 76, right hemisphere 489.1
1944 Female, age 72, unknown 484.6
2224 Female, age 72, unknown 462.2
2825 Male, age 18, unknown 454.2
2407 Male, age 75, both hemispheres 431.8
2273 Male, age 74, both hemispheres 425.1
2667 Female, age 75, unknown 404.8
Red nucleus
nTPM: 538.0
2503 Female, age 72, unknown 687.5
2769 Male, age 72, unknown 565.7
2584 Male, age 75, left hemisphere 560.1
2227 Male, age 72, unknown 555.0
2785 Male, age 18, unknown 551.7
2725 Female, age 75, unknown 546.4
2588 Male, age 74, left hemisphere 539.4
1865 Male, age 51, unknown 535.4
1904 Male, age 53, unknown 497.5
1821 Female, age 72, unknown 482.4
2823 Male, age 76, right hemisphere 471.6
1954 Female, age 42, unknown 463.6
Substantia nigra
nTPM: 518.5
2699 Male, age 18, unknown 595.3
1851 Male, age 51, unknown 594.6
2665 Male, age 74, both hemispheres 549.7
1916 Female, age 42, unknown 545.2
1889 Female, age 72, unknown 517.9
2583 Male, age 75, right hemisphere 516.9
2590 Female, age 75, unknown 510.6
2409 Female, age 72, unknown 475.8
1941 Male, age 53, unknown 472.9
2241 Male, age 72, unknown 405.7
Superior colliculus
nTPM: 520.7
2587 Male, age 74, left hemisphere 612.0
1995 Male, age 72, unknown 584.4
1796 Male, age 53, unknown 571.3
1913 Female, age 42, unknown 536.7
2668 Female, age 75, unknown 532.1
2664 Male, age 75, both hemispheres 529.0
2261 Male, age 18, unknown 509.9
1839 Male, age 51, unknown 468.5
2087 Female, age 72, unknown 465.2
1895 Male, age 76, right hemisphere 397.5
Ventral tegmental area
nTPM: 512.1
1915 Female, age 42, unknown 563.4
2223 Female, age 72, unknown 531.0
2021 Male, age 53, unknown 512.7
2410 Female, age 72, unknown 504.3
2218 Male, age 76, both hemispheres 481.4
1942 Male, age 51, unknown 479.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1344.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1344.8
Samples: 139

Max nTPM: 4441.0
Min nTPM: 501.7
Std nTPM: 550.3
Median nTPM: 1229.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 4441.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2927.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2823.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2816.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2779.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2582.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 2551.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2388.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 2329.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 2181.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 2110.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 53.8
FF:10158-103A5 76 years, female 53.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1259.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 1259.6
Samples: 4

Max nTPM: 1442.0
Min nTPM: 1096.4
Sample A Male 1442.0
Sample B Male 1161.7
Sample C Female 1096.4
Sample D Female 1338.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.2
75774687 Antisense, RP_060530_01_D12, Mouse strain C57BL/6J (56 days, male) 6.9
68321982 Antisense, RP_041207_01_B08, Mouse strain C57BL/6J (56 days, male) 3.5

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