MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:47.0 nTPM
HPA Brain:86.3 nTPM
GTEx:47.0 nTPM
FANTOM5:77.2 Scaled Tags Per Million
Pig:106.6 nTPM
Mouse:21.0 nTPM
Allen mouse:2.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 86.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 72.9
1830 Male, age 51, unknown 84.7
1870 Female, age 42, unknown 82.3
2019 Male, age 18, unknown 80.0
2586 Male, age 75, left hemisphere 76.8
1833 Male, age 53, unknown 73.3
2411 Female, age 72, unknown 72.4
1827 Male, age 72, unknown 70.2
2828 Female, age 72, unknown 68.1
2219 Male, age 76, both hemispheres 60.9
2666 Male, age 74, left hemisphere 60.3
Dorsal raphe nucleus
nTPM: 62.5
2750 Male, age 76, both hemispheres 74.4
2016 Female, age 72, unknown 69.8
1828 Male, age 53, unknown 65.8
2047 Male, age 72, unknown 57.1
2298 Female, age 72, unknown 45.1
Inferior colliculus
nTPM: 63.6
1848 Female, age 42, unknown 74.2
2849 Male, age 72, unknown 64.2
1890 Male, age 53, unknown 60.4
2097 Female, age 72, unknown 55.6
Median raphe nucleus
nTPM: 51.9
2220 Male, age 76, midline 51.9
Periaquaductal grey, anterior
nTPM: 58.0
1947 Male, age 18, unknown 61.0
2502 Female, age 75, unknown 61.0
1795 Male, age 51, unknown 52.2
Periaquaductal grey, dorsal
nTPM: 61.0
1840 Male, age 53, unknown 67.6
1831 Male, age 72, unknown 61.2
2464 Female, age 72, unknown 60.7
2850 Male, age 76, both hemispheres 54.6
Periaquaductal grey, lateral
nTPM: 53.7
2053 Male, age 18, unknown 58.2
2140 Male, age 76, both hemispheres 56.4
2272 Male, age 74, both hemispheres 46.4
Pretectal area
nTPM: 63.0
2316 Male, age 76, right hemisphere 72.1
1817 Female, age 42, unknown 70.1
2407 Male, age 75, both hemispheres 69.5
1815 Male, age 53, unknown 69.3
2007 Male, age 72, unknown 66.9
2667 Female, age 75, unknown 62.5
1944 Female, age 72, unknown 62.4
2825 Male, age 18, unknown 60.8
2224 Female, age 72, unknown 55.5
1816 Male, age 51, unknown 54.3
2273 Male, age 74, both hemispheres 49.6
Red nucleus
nTPM: 86.3
2503 Female, age 72, unknown 99.2
1865 Male, age 51, unknown 96.8
1954 Female, age 42, unknown 95.3
1821 Female, age 72, unknown 93.7
2588 Male, age 74, left hemisphere 88.7
1904 Male, age 53, unknown 88.4
2823 Male, age 76, right hemisphere 86.4
2785 Male, age 18, unknown 85.5
2227 Male, age 72, unknown 82.7
2769 Male, age 72, unknown 80.2
2584 Male, age 75, left hemisphere 69.8
2725 Female, age 75, unknown 68.9
Substantia nigra
nTPM: 66.1
2583 Male, age 75, right hemisphere 79.5
2590 Female, age 75, unknown 78.7
2699 Male, age 18, unknown 68.3
1889 Female, age 72, unknown 65.5
2409 Female, age 72, unknown 64.9
1851 Male, age 51, unknown 63.5
2241 Male, age 72, unknown 63.4
1916 Female, age 42, unknown 61.0
1941 Male, age 53, unknown 60.5
2665 Male, age 74, both hemispheres 55.1
Superior colliculus
nTPM: 68.5
1913 Female, age 42, unknown 86.1
1895 Male, age 76, right hemisphere 80.7
1995 Male, age 72, unknown 79.5
1839 Male, age 51, unknown 73.0
2668 Female, age 75, unknown 66.9
2587 Male, age 74, left hemisphere 66.5
2087 Female, age 72, unknown 62.0
2664 Male, age 75, both hemispheres 61.2
1796 Male, age 53, unknown 56.1
2261 Male, age 18, unknown 53.0
Ventral tegmental area
nTPM: 64.2
2410 Female, age 72, unknown 73.3
2223 Female, age 72, unknown 67.2
2021 Male, age 53, unknown 64.1
2218 Male, age 76, both hemispheres 60.9
1915 Female, age 42, unknown 60.2
1942 Male, age 51, unknown 59.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 47.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 47.0
Samples: 139

Max nTPM: 143.8
Min nTPM: 23.9
Std nTPM: 16.5
Median nTPM: 43.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 143.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 93.6
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 91.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 89.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 81.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 81.1
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 76.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 75.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 74.8
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 74.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 73.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 77.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 77.2
FF:10158-103A5 76 years, female 77.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 106.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 97.8
Samples: 4

Max nTPM: 122.8
Min nTPM: 81.9
Sample A Female 88.6
Sample B Female 81.9
Sample C Male 97.8
Sample D Male 122.8
Midbrain
nTPM: 106.6
Samples: 4

Max nTPM: 133.1
Min nTPM: 81.5
Sample A Female 133.1
Sample B Female 117.6
Sample C Male 94.3
Sample D Male 81.5
Periaqueductal gray
nTPM: 92.9
Samples: 3

Max nTPM: 96.9
Min nTPM: 85.4
Sample B Female 96.9
Sample C Male 85.4
Sample D Male 96.3
Superior colliculi
nTPM: 84.1
Samples: 4

Max nTPM: 103.8
Min nTPM: 54.7
Sample A Female 77.2
Sample B Female 54.7
Sample C Male 103.8
Sample D Male 100.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 21.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.0
Samples: 4

Max nTPM: 22.9
Min nTPM: 17.7
Sample A Male 17.7
Sample B Male 22.9
Sample C Female 22.5
Sample D Female 20.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
70231893 Antisense, RP_050526_02_C01, Mouse strain C57BL/6J (56 days, male) 3.6
73635978 Antisense, RP_051101_03_C11, Mouse strain C57BL/6J (56 days, male) 2.4
71723845 Antisense, RP_050921_01_A06, Mouse strain C57BL/6J (56 days, male) 1.4

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