MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:75.9 nTPM
HPA Brain:160.6 nTPM
GTEx:75.9 nTPM
FANTOM5:196.2 Scaled Tags Per Million
Pig:84.6 nTPM
Mouse:113.0 nTPM
Allen mouse:10.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 160.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 138.7
2411 Female, age 72, unknown 206.2
2019 Male, age 18, unknown 171.0
1870 Female, age 42, unknown 166.7
1833 Male, age 53, unknown 147.8
1830 Male, age 51, unknown 147.5
2828 Female, age 72, unknown 119.3
1827 Male, age 72, unknown 111.9
2666 Male, age 74, left hemisphere 107.5
2219 Male, age 76, both hemispheres 107.2
2586 Male, age 75, left hemisphere 102.1
Dorsal raphe nucleus
nTPM: 112.0
2750 Male, age 76, both hemispheres 159.8
1828 Male, age 53, unknown 107.4
2016 Female, age 72, unknown 104.2
2047 Male, age 72, unknown 96.2
2298 Female, age 72, unknown 92.2
Inferior colliculus
nTPM: 110.0
2097 Female, age 72, unknown 129.3
1890 Male, age 53, unknown 121.1
1848 Female, age 42, unknown 107.9
2849 Male, age 72, unknown 81.8
Median raphe nucleus
nTPM: 97.7
2220 Male, age 76, midline 97.7
Periaquaductal grey, anterior
nTPM: 98.8
2502 Female, age 75, unknown 110.6
1947 Male, age 18, unknown 106.5
1795 Male, age 51, unknown 79.3
Periaquaductal grey, dorsal
nTPM: 79.5
2464 Female, age 72, unknown 113.1
1831 Male, age 72, unknown 85.0
1840 Male, age 53, unknown 63.6
2850 Male, age 76, both hemispheres 56.3
Periaquaductal grey, lateral
nTPM: 85.8
2272 Male, age 74, both hemispheres 108.3
2053 Male, age 18, unknown 94.2
2140 Male, age 76, both hemispheres 54.9
Pretectal area
nTPM: 112.5
1815 Male, age 53, unknown 144.9
2007 Male, age 72, unknown 144.6
1817 Female, age 42, unknown 129.1
2273 Male, age 74, both hemispheres 118.0
2407 Male, age 75, both hemispheres 113.1
1816 Male, age 51, unknown 108.3
1944 Female, age 72, unknown 107.2
2667 Female, age 75, unknown 103.6
2316 Male, age 76, right hemisphere 97.2
2825 Male, age 18, unknown 88.0
2224 Female, age 72, unknown 83.1
Red nucleus
nTPM: 160.6
1821 Female, age 72, unknown 207.0
1865 Male, age 51, unknown 198.3
1904 Male, age 53, unknown 179.6
2785 Male, age 18, unknown 175.2
2769 Male, age 72, unknown 161.6
1954 Female, age 42, unknown 157.2
2503 Female, age 72, unknown 156.9
2227 Male, age 72, unknown 153.6
2588 Male, age 74, left hemisphere 151.6
2823 Male, age 76, right hemisphere 137.1
2584 Male, age 75, left hemisphere 127.2
2725 Female, age 75, unknown 122.0
Substantia nigra
nTPM: 117.1
2409 Female, age 72, unknown 145.8
1851 Male, age 51, unknown 138.2
1889 Female, age 72, unknown 131.9
2583 Male, age 75, right hemisphere 127.6
2241 Male, age 72, unknown 120.9
2590 Female, age 75, unknown 114.4
1916 Female, age 42, unknown 112.8
1941 Male, age 53, unknown 109.7
2699 Male, age 18, unknown 100.0
2665 Male, age 74, both hemispheres 69.5
Superior colliculus
nTPM: 123.0
1913 Female, age 42, unknown 163.8
2587 Male, age 74, left hemisphere 151.5
2668 Female, age 75, unknown 148.1
1995 Male, age 72, unknown 145.8
1895 Male, age 76, right hemisphere 126.8
1839 Male, age 51, unknown 109.4
1796 Male, age 53, unknown 105.7
2087 Female, age 72, unknown 103.6
2261 Male, age 18, unknown 99.8
2664 Male, age 75, both hemispheres 75.0
Ventral tegmental area
nTPM: 130.1
2410 Female, age 72, unknown 199.6
2223 Female, age 72, unknown 153.8
1915 Female, age 42, unknown 110.8
2218 Male, age 76, both hemispheres 109.1
1942 Male, age 51, unknown 106.0
2021 Male, age 53, unknown 101.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 75.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 75.9
Samples: 139

Max nTPM: 170.7
Min nTPM: 21.7
Std nTPM: 30.4
Median nTPM: 69.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 170.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 169.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 164.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 156.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 147.4
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 142.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 139.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 131.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 129.0
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 125.1
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 121.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 196.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 196.2
FF:10158-103A5 76 years, female 196.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 84.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 71.4
Samples: 4

Max nTPM: 86.2
Min nTPM: 55.6
Sample A Female 86.2
Sample B Female 55.6
Sample C Male 83.2
Sample D Male 60.4
Midbrain
nTPM: 84.6
Samples: 4

Max nTPM: 119.2
Min nTPM: 64.8
Sample A Female 87.7
Sample B Female 66.7
Sample C Male 119.2
Sample D Male 64.8
Periaqueductal gray
nTPM: 47.9
Samples: 3

Max nTPM: 50.8
Min nTPM: 45.3
Sample B Female 47.7
Sample C Male 50.8
Sample D Male 45.3
Superior colliculi
nTPM: 74.0
Samples: 4

Max nTPM: 102.9
Min nTPM: 51.3
Sample A Female 71.6
Sample B Female 51.3
Sample C Male 102.9
Sample D Male 70.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 113.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 113.1
Samples: 4

Max nTPM: 115.5
Min nTPM: 112.0
Sample A Male 115.5
Sample B Male 112.7
Sample C Female 112.0
Sample D Female 112.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.6
2366 Antisense, RP_Baylor_102826, Mouse strain C57BL/6J (56 days, male) 13.6
74881159 Antisense, RP_060220_01_A08, Mouse strain C57BL/6J (56 days, male) 7.6

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