MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:49.0 nTPM
HPA Brain:317.6 nTPM
GTEx:49.0 nTPM
FANTOM5:843.7 Scaled Tags Per Million
Pig:92.3 nTPM
Mouse:48.6 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 317.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 257.3
1870 Female, age 42, unknown 331.0
1830 Male, age 51, unknown 317.8
1833 Male, age 53, unknown 305.2
2828 Female, age 72, unknown 293.2
2411 Female, age 72, unknown 289.1
2019 Male, age 18, unknown 265.3
2666 Male, age 74, left hemisphere 222.7
1827 Male, age 72, unknown 197.6
2586 Male, age 75, left hemisphere 183.3
2219 Male, age 76, both hemispheres 167.4
Dorsal raphe nucleus
nTPM: 195.4
2750 Male, age 76, both hemispheres 318.5
2016 Female, age 72, unknown 223.1
1828 Male, age 53, unknown 187.0
2298 Female, age 72, unknown 129.9
2047 Male, age 72, unknown 118.6
Inferior colliculus
nTPM: 167.2
2849 Male, age 72, unknown 194.3
1848 Female, age 42, unknown 172.5
1890 Male, age 53, unknown 172.2
2097 Female, age 72, unknown 130.0
Median raphe nucleus
nTPM: 158.2
2220 Male, age 76, midline 158.2
Periaquaductal grey, anterior
nTPM: 181.7
2502 Female, age 75, unknown 223.2
1947 Male, age 18, unknown 176.1
1795 Male, age 51, unknown 145.7
Periaquaductal grey, dorsal
nTPM: 165.3
2464 Female, age 72, unknown 200.8
2850 Male, age 76, both hemispheres 195.2
1831 Male, age 72, unknown 153.0
1840 Male, age 53, unknown 112.3
Periaquaductal grey, lateral
nTPM: 188.2
2140 Male, age 76, both hemispheres 205.8
2053 Male, age 18, unknown 190.4
2272 Male, age 74, both hemispheres 168.3
Pretectal area
nTPM: 186.7
2667 Female, age 75, unknown 261.7
2316 Male, age 76, right hemisphere 254.4
1815 Male, age 53, unknown 226.8
2825 Male, age 18, unknown 190.2
1817 Female, age 42, unknown 183.0
2273 Male, age 74, both hemispheres 179.2
2407 Male, age 75, both hemispheres 179.2
2007 Male, age 72, unknown 162.8
2224 Female, age 72, unknown 157.9
1944 Female, age 72, unknown 139.9
1816 Male, age 51, unknown 118.4
Red nucleus
nTPM: 317.6
1865 Male, age 51, unknown 391.5
2769 Male, age 72, unknown 375.7
2227 Male, age 72, unknown 370.9
2823 Male, age 76, right hemisphere 347.1
1904 Male, age 53, unknown 345.9
1821 Female, age 72, unknown 329.4
2503 Female, age 72, unknown 326.2
2785 Male, age 18, unknown 320.7
1954 Female, age 42, unknown 301.9
2588 Male, age 74, left hemisphere 253.4
2584 Male, age 75, left hemisphere 233.0
2725 Female, age 75, unknown 215.1
Substantia nigra
nTPM: 203.3
2699 Male, age 18, unknown 276.3
1851 Male, age 51, unknown 244.4
2409 Female, age 72, unknown 240.1
2583 Male, age 75, right hemisphere 211.8
2590 Female, age 75, unknown 196.1
1889 Female, age 72, unknown 192.8
1941 Male, age 53, unknown 187.2
2241 Male, age 72, unknown 168.2
1916 Female, age 42, unknown 166.3
2665 Male, age 74, both hemispheres 149.3
Superior colliculus
nTPM: 225.1
1913 Female, age 42, unknown 374.9
1995 Male, age 72, unknown 347.5
1895 Male, age 76, right hemisphere 241.5
1839 Male, age 51, unknown 237.2
2587 Male, age 74, left hemisphere 228.2
1796 Male, age 53, unknown 200.0
2668 Female, age 75, unknown 176.0
2664 Male, age 75, both hemispheres 156.1
2087 Female, age 72, unknown 154.0
2261 Male, age 18, unknown 135.8
Ventral tegmental area
nTPM: 224.6
2223 Female, age 72, unknown 283.2
2410 Female, age 72, unknown 270.9
2218 Male, age 76, both hemispheres 202.7
2021 Male, age 53, unknown 202.5
1915 Female, age 42, unknown 194.8
1942 Male, age 51, unknown 193.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 49.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 49.0
Samples: 139

Max nTPM: 171.5
Min nTPM: 14.9
Std nTPM: 22.4
Median nTPM: 44.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 171.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 114.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 106.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 106.4
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 97.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 91.9
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 89.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 85.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 84.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 82.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 81.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 843.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 843.7
FF:10158-103A5 76 years, female 843.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 92.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 89.1
Samples: 4

Max nTPM: 114.4
Min nTPM: 58.8
Sample A Female 72.1
Sample B Female 110.9
Sample C Male 58.8
Sample D Male 114.4
Midbrain
nTPM: 92.3
Samples: 4

Max nTPM: 154.6
Min nTPM: 35.4
Sample A Female 154.6
Sample B Female 139.6
Sample C Male 39.5
Sample D Male 35.4
Periaqueductal gray
nTPM: 68.4
Samples: 3

Max nTPM: 110.4
Min nTPM: 44.3
Sample B Female 110.4
Sample C Male 44.3
Sample D Male 50.4
Superior colliculi
nTPM: 71.9
Samples: 4

Max nTPM: 77.5
Min nTPM: 62.7
Sample A Female 77.5
Sample B Female 74.9
Sample C Male 62.7
Sample D Male 72.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 48.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 48.6
Samples: 4

Max nTPM: 50.7
Min nTPM: 45.2
Sample A Male 50.7
Sample B Male 45.2
Sample C Female 48.9
Sample D Female 49.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
638709 Antisense, RP_040831_02_C07, Mouse strain C57BL/6J (56 days, male) 0.0

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