MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:55.1 nTPM
HPA Brain:109.4 nTPM
GTEx:55.1 nTPM
FANTOM5:52.2 Scaled Tags Per Million
Pig:64.0 nTPM
Mouse:113.9 nTPM
Allen mouse:16.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 109.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 102.5
2586 Male, age 75, left hemisphere 142.3
2219 Male, age 76, both hemispheres 112.0
2666 Male, age 74, left hemisphere 106.2
1827 Male, age 72, unknown 105.7
2828 Female, age 72, unknown 105.0
1833 Male, age 53, unknown 93.7
1870 Female, age 42, unknown 93.6
2019 Male, age 18, unknown 92.3
2411 Female, age 72, unknown 90.4
1830 Male, age 51, unknown 83.4
Dorsal raphe nucleus
nTPM: 100.3
2298 Female, age 72, unknown 115.4
2047 Male, age 72, unknown 111.8
2750 Male, age 76, both hemispheres 93.8
1828 Male, age 53, unknown 92.9
2016 Female, age 72, unknown 87.7
Inferior colliculus
nTPM: 88.6
1890 Male, age 53, unknown 91.4
2097 Female, age 72, unknown 90.7
2849 Male, age 72, unknown 87.1
1848 Female, age 42, unknown 85.4
Median raphe nucleus
nTPM: 103.7
2220 Male, age 76, midline 103.7
Periaquaductal grey, anterior
nTPM: 105.6
1795 Male, age 51, unknown 114.4
1947 Male, age 18, unknown 106.9
2502 Female, age 75, unknown 95.6
Periaquaductal grey, dorsal
nTPM: 89.3
1840 Male, age 53, unknown 104.9
2464 Female, age 72, unknown 87.4
1831 Male, age 72, unknown 83.3
2850 Male, age 76, both hemispheres 81.5
Periaquaductal grey, lateral
nTPM: 87.0
2140 Male, age 76, both hemispheres 92.9
2053 Male, age 18, unknown 87.0
2272 Male, age 74, both hemispheres 81.0
Pretectal area
nTPM: 101.0
1816 Male, age 51, unknown 118.7
2007 Male, age 72, unknown 114.3
1944 Female, age 72, unknown 111.3
2667 Female, age 75, unknown 104.0
2825 Male, age 18, unknown 101.6
2224 Female, age 72, unknown 99.7
1817 Female, age 42, unknown 98.2
2407 Male, age 75, both hemispheres 96.2
1815 Male, age 53, unknown 95.4
2316 Male, age 76, right hemisphere 87.2
2273 Male, age 74, both hemispheres 84.3
Red nucleus
nTPM: 91.5
2584 Male, age 75, left hemisphere 115.2
2588 Male, age 74, left hemisphere 102.8
2785 Male, age 18, unknown 98.4
2769 Male, age 72, unknown 92.2
1904 Male, age 53, unknown 92.0
2503 Female, age 72, unknown 90.5
1821 Female, age 72, unknown 87.6
2227 Male, age 72, unknown 87.5
2725 Female, age 75, unknown 86.0
1954 Female, age 42, unknown 83.4
1865 Male, age 51, unknown 82.7
2823 Male, age 76, right hemisphere 80.2
Substantia nigra
nTPM: 109.4
1916 Female, age 42, unknown 133.6
2665 Male, age 74, both hemispheres 119.8
1851 Male, age 51, unknown 118.8
2583 Male, age 75, right hemisphere 111.5
1941 Male, age 53, unknown 108.5
2590 Female, age 75, unknown 107.0
2241 Male, age 72, unknown 104.7
2409 Female, age 72, unknown 96.8
1889 Female, age 72, unknown 96.6
2699 Male, age 18, unknown 96.4
Superior colliculus
nTPM: 102.3
2664 Male, age 75, both hemispheres 125.5
2668 Female, age 75, unknown 116.3
2261 Male, age 18, unknown 113.4
1796 Male, age 53, unknown 110.8
2087 Female, age 72, unknown 104.3
1839 Male, age 51, unknown 95.4
1913 Female, age 42, unknown 92.0
2587 Male, age 74, left hemisphere 88.6
1995 Male, age 72, unknown 88.4
1895 Male, age 76, right hemisphere 87.9
Ventral tegmental area
nTPM: 102.5
1915 Female, age 42, unknown 115.5
2218 Male, age 76, both hemispheres 105.3
1942 Male, age 51, unknown 103.8
2410 Female, age 72, unknown 101.8
2223 Female, age 72, unknown 95.0
2021 Male, age 53, unknown 93.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 55.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 55.1
Samples: 139

Max nTPM: 100.2
Min nTPM: 29.4
Std nTPM: 12.8
Median nTPM: 53.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 100.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 87.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 86.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 82.7
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 82.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 80.2
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 80.1
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 79.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 77.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 77.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 75.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 52.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 52.2
FF:10158-103A5 76 years, female 52.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 64.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 58.9
Samples: 4

Max nTPM: 73.0
Min nTPM: 40.4
Sample A Female 71.8
Sample B Female 50.5
Sample C Male 73.0
Sample D Male 40.4
Midbrain
nTPM: 62.9
Samples: 4

Max nTPM: 80.1
Min nTPM: 48.9
Sample A Female 48.9
Sample B Female 54.8
Sample C Male 80.1
Sample D Male 67.7
Periaqueductal gray
nTPM: 54.1
Samples: 3

Max nTPM: 65.5
Min nTPM: 48.3
Sample B Female 48.4
Sample C Male 65.5
Sample D Male 48.3
Superior colliculi
nTPM: 64.1
Samples: 4

Max nTPM: 73.1
Min nTPM: 53.7
Sample A Female 73.1
Sample B Female 53.7
Sample C Male 67.9
Sample D Male 61.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 113.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 113.9
Samples: 4

Max nTPM: 117.4
Min nTPM: 111.2
Sample A Male 111.2
Sample B Male 115.4
Sample C Female 111.5
Sample D Female 117.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 16.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.9
68667823 Antisense, RP_050201_02_H07, Mouse strain C57BL/6J (56 days, male) 16.9

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