MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.2 nTPM
HPA Brain:21.6 nTPM
GTEx:26.2 nTPM
FANTOM5:172.0 Scaled Tags Per Million
Pig:54.2 nTPM
Mouse:70.7 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 21.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.4
2019 Male, age 18, unknown 22.2
1870 Female, age 42, unknown 21.5
2586 Male, age 75, left hemisphere 21.5
1827 Male, age 72, unknown 21.4
2411 Female, age 72, unknown 20.7
1833 Male, age 53, unknown 17.3
2828 Female, age 72, unknown 17.1
1830 Male, age 51, unknown 16.3
2666 Male, age 74, left hemisphere 14.3
2219 Male, age 76, both hemispheres 11.5
Dorsal raphe nucleus
nTPM: 20.1
2298 Female, age 72, unknown 26.2
2750 Male, age 76, both hemispheres 19.7
2047 Male, age 72, unknown 19.6
1828 Male, age 53, unknown 18.0
2016 Female, age 72, unknown 16.8
Inferior colliculus
nTPM: 18.5
2097 Female, age 72, unknown 22.3
1848 Female, age 42, unknown 18.4
1890 Male, age 53, unknown 17.5
2849 Male, age 72, unknown 15.8
Median raphe nucleus
nTPM: 21.6
2220 Male, age 76, midline 21.6
Periaquaductal grey, anterior
nTPM: 19.4
2502 Female, age 75, unknown 21.5
1947 Male, age 18, unknown 20.2
1795 Male, age 51, unknown 16.6
Periaquaductal grey, dorsal
nTPM: 18.9
1840 Male, age 53, unknown 20.3
2850 Male, age 76, both hemispheres 19.8
1831 Male, age 72, unknown 18.7
2464 Female, age 72, unknown 16.6
Periaquaductal grey, lateral
nTPM: 16.1
2140 Male, age 76, both hemispheres 18.9
2053 Male, age 18, unknown 17.5
2272 Male, age 74, both hemispheres 11.9
Pretectal area
nTPM: 21.6
2007 Male, age 72, unknown 26.6
1944 Female, age 72, unknown 24.8
1817 Female, age 42, unknown 24.6
1816 Male, age 51, unknown 22.7
1815 Male, age 53, unknown 22.5
2316 Male, age 76, right hemisphere 21.8
2224 Female, age 72, unknown 21.2
2667 Female, age 75, unknown 21.1
2273 Male, age 74, both hemispheres 18.1
2407 Male, age 75, both hemispheres 17.1
2825 Male, age 18, unknown 16.5
Red nucleus
nTPM: 19.8
1821 Female, age 72, unknown 23.9
2725 Female, age 75, unknown 21.8
2588 Male, age 74, left hemisphere 21.3
2823 Male, age 76, right hemisphere 21.1
1954 Female, age 42, unknown 20.3
1904 Male, age 53, unknown 19.9
2785 Male, age 18, unknown 19.9
1865 Male, age 51, unknown 19.2
2227 Male, age 72, unknown 18.1
2503 Female, age 72, unknown 18.1
2584 Male, age 75, left hemisphere 17.1
2769 Male, age 72, unknown 16.9
Substantia nigra
nTPM: 18.8
1916 Female, age 42, unknown 22.5
1851 Male, age 51, unknown 21.9
1889 Female, age 72, unknown 21.7
2241 Male, age 72, unknown 21.3
1941 Male, age 53, unknown 20.2
2590 Female, age 75, unknown 17.7
2409 Female, age 72, unknown 16.4
2665 Male, age 74, both hemispheres 15.9
2699 Male, age 18, unknown 15.4
2583 Male, age 75, right hemisphere 14.6
Superior colliculus
nTPM: 19.0
2087 Female, age 72, unknown 21.2
2587 Male, age 74, left hemisphere 21.2
1796 Male, age 53, unknown 20.9
1895 Male, age 76, right hemisphere 20.4
2261 Male, age 18, unknown 20.3
1913 Female, age 42, unknown 20.2
1839 Male, age 51, unknown 19.5
1995 Male, age 72, unknown 16.4
2668 Female, age 75, unknown 16.1
2664 Male, age 75, both hemispheres 13.3
Ventral tegmental area
nTPM: 18.6
2218 Male, age 76, both hemispheres 20.8
1915 Female, age 42, unknown 19.6
1942 Male, age 51, unknown 18.8
2223 Female, age 72, unknown 18.2
2410 Female, age 72, unknown 18.1
2021 Male, age 53, unknown 16.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 26.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.2
Samples: 139

Max nTPM: 67.3
Min nTPM: 11.2
Std nTPM: 9.1
Median nTPM: 24.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 67.3
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 57.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 56.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 53.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 52.6
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 51.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 47.8
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 46.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 44.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 43.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 40.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 172.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 172.0
FF:10158-103A5 76 years, female 172.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 54.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 48.0
Samples: 4

Max nTPM: 53.4
Min nTPM: 40.9
Sample A Female 40.9
Sample B Female 50.2
Sample C Male 47.4
Sample D Male 53.4
Midbrain
nTPM: 50.5
Samples: 4

Max nTPM: 54.7
Min nTPM: 44.7
Sample A Female 49.6
Sample B Female 54.7
Sample C Male 44.7
Sample D Male 53.1
Periaqueductal gray
nTPM: 54.2
Samples: 3

Max nTPM: 56.1
Min nTPM: 50.6
Sample B Female 55.9
Sample C Male 50.6
Sample D Male 56.1
Superior colliculi
nTPM: 43.8
Samples: 4

Max nTPM: 46.5
Min nTPM: 40.8
Sample A Female 44.1
Sample B Female 43.7
Sample C Male 40.8
Sample D Male 46.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 70.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 70.7
Samples: 4

Max nTPM: 73.4
Min nTPM: 68.9
Sample A Male 73.4
Sample B Male 70.4
Sample C Female 68.9
Sample D Female 70.0

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