MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:414.0 nTPM
HPA Brain:106.7 nTPM
GTEx:414.0 nTPM
FANTOM5:222.9 Scaled Tags Per Million
Pig:361.9 nTPM
Mouse:196.6 nTPM
Allen mouse:3.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 106.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 96.5
1870 Female, age 42, unknown 119.5
2666 Male, age 74, left hemisphere 112.2
2219 Male, age 76, both hemispheres 104.8
2586 Male, age 75, left hemisphere 100.5
1827 Male, age 72, unknown 94.9
1833 Male, age 53, unknown 89.7
2411 Female, age 72, unknown 86.9
2019 Male, age 18, unknown 86.3
1830 Male, age 51, unknown 86.2
2828 Female, age 72, unknown 83.7
Dorsal raphe nucleus
nTPM: 89.8
2016 Female, age 72, unknown 95.0
2298 Female, age 72, unknown 95.0
1828 Male, age 53, unknown 89.3
2750 Male, age 76, both hemispheres 86.2
2047 Male, age 72, unknown 83.4
Inferior colliculus
nTPM: 94.9
2849 Male, age 72, unknown 104.8
1890 Male, age 53, unknown 104.2
1848 Female, age 42, unknown 91.0
2097 Female, age 72, unknown 79.5
Median raphe nucleus
nTPM: 97.9
2220 Male, age 76, midline 97.9
Periaquaductal grey, anterior
nTPM: 88.4
2502 Female, age 75, unknown 97.8
1947 Male, age 18, unknown 85.4
1795 Male, age 51, unknown 81.9
Periaquaductal grey, dorsal
nTPM: 95.6
1840 Male, age 53, unknown 106.8
2850 Male, age 76, both hemispheres 103.0
1831 Male, age 72, unknown 95.9
2464 Female, age 72, unknown 76.8
Periaquaductal grey, lateral
nTPM: 78.9
2053 Male, age 18, unknown 92.1
2140 Male, age 76, both hemispheres 81.5
2272 Male, age 74, both hemispheres 63.2
Pretectal area
nTPM: 87.9
1817 Female, age 42, unknown 97.8
1815 Male, age 53, unknown 96.1
1816 Male, age 51, unknown 93.7
2007 Male, age 72, unknown 92.5
2825 Male, age 18, unknown 92.0
2407 Male, age 75, both hemispheres 88.3
2224 Female, age 72, unknown 87.1
2667 Female, age 75, unknown 85.5
1944 Female, age 72, unknown 84.1
2316 Male, age 76, right hemisphere 82.9
2273 Male, age 74, both hemispheres 66.6
Red nucleus
nTPM: 104.8
2503 Female, age 72, unknown 132.1
1821 Female, age 72, unknown 121.6
2588 Male, age 74, left hemisphere 112.4
1865 Male, age 51, unknown 109.7
1904 Male, age 53, unknown 106.5
2584 Male, age 75, left hemisphere 105.4
2227 Male, age 72, unknown 98.0
1954 Female, age 42, unknown 96.3
2725 Female, age 75, unknown 96.2
2769 Male, age 72, unknown 94.0
2823 Male, age 76, right hemisphere 93.9
2785 Male, age 18, unknown 91.3
Substantia nigra
nTPM: 106.7
2409 Female, age 72, unknown 138.8
2699 Male, age 18, unknown 118.4
2665 Male, age 74, both hemispheres 117.9
1851 Male, age 51, unknown 114.6
2241 Male, age 72, unknown 103.0
2590 Female, age 75, unknown 102.6
1889 Female, age 72, unknown 102.0
1916 Female, age 42, unknown 100.6
1941 Male, age 53, unknown 94.6
2583 Male, age 75, right hemisphere 74.9
Superior colliculus
nTPM: 97.2
1913 Female, age 42, unknown 113.8
2587 Male, age 74, left hemisphere 112.0
1995 Male, age 72, unknown 106.4
2668 Female, age 75, unknown 99.1
1895 Male, age 76, right hemisphere 97.0
1839 Male, age 51, unknown 96.2
2664 Male, age 75, both hemispheres 92.0
2261 Male, age 18, unknown 90.6
1796 Male, age 53, unknown 87.2
2087 Female, age 72, unknown 77.3
Ventral tegmental area
nTPM: 96.2
2223 Female, age 72, unknown 114.4
1915 Female, age 42, unknown 110.7
1942 Male, age 51, unknown 93.4
2021 Male, age 53, unknown 90.4
2218 Male, age 76, both hemispheres 88.2
2410 Female, age 72, unknown 79.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 414.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 414.0
Samples: 139

Max nTPM: 1194.0
Min nTPM: 204.9
Std nTPM: 148.9
Median nTPM: 381.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1194.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1142.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 910.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 730.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 701.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 666.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 647.7
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 645.4
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 634.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 633.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 628.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 222.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 222.9
FF:10158-103A5 76 years, female 222.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 361.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 361.9
Samples: 4

Max nTPM: 503.8
Min nTPM: 258.0
Sample A Female 503.8
Sample B Female 368.3
Sample C Male 317.3
Sample D Male 258.0
Midbrain
nTPM: 342.0
Samples: 4

Max nTPM: 430.8
Min nTPM: 250.6
Sample A Female 430.8
Sample B Female 395.2
Sample C Male 291.4
Sample D Male 250.6
Periaqueductal gray
nTPM: 293.0
Samples: 3

Max nTPM: 308.2
Min nTPM: 272.9
Sample B Female 297.8
Sample C Male 308.2
Sample D Male 272.9
Superior colliculi
nTPM: 343.3
Samples: 4

Max nTPM: 426.5
Min nTPM: 270.4
Sample A Female 426.5
Sample B Female 270.4
Sample C Male 372.8
Sample D Male 303.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 196.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 196.6
Samples: 4

Max nTPM: 205.1
Min nTPM: 187.5
Sample A Male 197.9
Sample B Male 205.1
Sample C Female 187.5
Sample D Female 195.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.0
68445143 Antisense, RP_050111_02_H03, Mouse strain C57BL/6J (56 days, male) 3.0

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