MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:46.6 nTPM
HPA Brain:31.6 nTPM
GTEx:46.6 nTPM
FANTOM5:75.1 Scaled Tags Per Million
Pig:59.3 nTPM
Mouse:22.4 nTPM
Allen mouse:2.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 31.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.9
2666 Male, age 74, left hemisphere 31.3
1827 Male, age 72, unknown 30.8
1870 Female, age 42, unknown 30.6
2828 Female, age 72, unknown 29.6
1830 Male, age 51, unknown 27.7
2586 Male, age 75, left hemisphere 27.7
2019 Male, age 18, unknown 26.0
1833 Male, age 53, unknown 25.9
2411 Female, age 72, unknown 25.4
2219 Male, age 76, both hemispheres 23.9
Dorsal raphe nucleus
nTPM: 25.5
2016 Female, age 72, unknown 27.1
1828 Male, age 53, unknown 26.7
2750 Male, age 76, both hemispheres 26.0
2298 Female, age 72, unknown 24.9
2047 Male, age 72, unknown 22.6
Inferior colliculus
nTPM: 26.9
2849 Male, age 72, unknown 29.9
2097 Female, age 72, unknown 26.8
1848 Female, age 42, unknown 25.4
1890 Male, age 53, unknown 25.3
Median raphe nucleus
nTPM: 30.1
2220 Male, age 76, midline 30.1
Periaquaductal grey, anterior
nTPM: 31.2
2502 Female, age 75, unknown 33.1
1795 Male, age 51, unknown 30.6
1947 Male, age 18, unknown 30.0
Periaquaductal grey, dorsal
nTPM: 27.6
2850 Male, age 76, both hemispheres 34.2
1831 Male, age 72, unknown 27.1
1840 Male, age 53, unknown 26.8
2464 Female, age 72, unknown 22.5
Periaquaductal grey, lateral
nTPM: 27.4
2140 Male, age 76, both hemispheres 33.2
2053 Male, age 18, unknown 25.1
2272 Male, age 74, both hemispheres 24.1
Pretectal area
nTPM: 29.0
2316 Male, age 76, right hemisphere 33.9
1816 Male, age 51, unknown 33.2
2007 Male, age 72, unknown 31.7
1815 Male, age 53, unknown 30.5
1817 Female, age 42, unknown 29.8
2825 Male, age 18, unknown 28.8
2224 Female, age 72, unknown 28.4
2407 Male, age 75, both hemispheres 26.6
1944 Female, age 72, unknown 25.8
2667 Female, age 75, unknown 25.4
2273 Male, age 74, both hemispheres 25.2
Red nucleus
nTPM: 31.6
2503 Female, age 72, unknown 37.9
2725 Female, age 75, unknown 37.2
1821 Female, age 72, unknown 33.2
2588 Male, age 74, left hemisphere 32.5
1954 Female, age 42, unknown 32.3
1904 Male, age 53, unknown 31.1
2785 Male, age 18, unknown 31.1
1865 Male, age 51, unknown 30.4
2227 Male, age 72, unknown 30.0
2823 Male, age 76, right hemisphere 29.2
2769 Male, age 72, unknown 28.4
2584 Male, age 75, left hemisphere 25.3
Substantia nigra
nTPM: 27.9
2699 Male, age 18, unknown 31.7
1916 Female, age 42, unknown 30.8
2665 Male, age 74, both hemispheres 30.3
1889 Female, age 72, unknown 29.0
2590 Female, age 75, unknown 28.4
2409 Female, age 72, unknown 28.3
1851 Male, age 51, unknown 27.6
1941 Male, age 53, unknown 25.8
2241 Male, age 72, unknown 25.0
2583 Male, age 75, right hemisphere 22.5
Superior colliculus
nTPM: 28.9
1796 Male, age 53, unknown 31.8
1995 Male, age 72, unknown 31.0
1913 Female, age 42, unknown 30.8
2261 Male, age 18, unknown 30.7
2087 Female, age 72, unknown 29.3
2587 Male, age 74, left hemisphere 28.0
1895 Male, age 76, right hemisphere 27.8
1839 Male, age 51, unknown 27.4
2664 Male, age 75, both hemispheres 26.8
2668 Female, age 75, unknown 25.6
Ventral tegmental area
nTPM: 27.7
2218 Male, age 76, both hemispheres 31.2
2021 Male, age 53, unknown 28.6
1915 Female, age 42, unknown 27.5
2223 Female, age 72, unknown 27.3
1942 Male, age 51, unknown 26.9
2410 Female, age 72, unknown 24.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 46.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.6
Samples: 139

Max nTPM: 77.8
Min nTPM: 22.4
Std nTPM: 8.0
Median nTPM: 46.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 77.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 73.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 65.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 65.2
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 64.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 64.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 63.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 63.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 61.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 60.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 60.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 75.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 75.1
FF:10158-103A5 76 years, female 75.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 59.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 57.1
Samples: 4

Max nTPM: 70.0
Min nTPM: 46.1
Sample A Female 46.1
Sample B Female 53.7
Sample C Male 58.6
Sample D Male 70.0
Midbrain
nTPM: 59.3
Samples: 4

Max nTPM: 67.4
Min nTPM: 53.4
Sample A Female 67.4
Sample B Female 53.4
Sample C Male 55.7
Sample D Male 60.8
Periaqueductal gray
nTPM: 58.5
Samples: 3

Max nTPM: 61.0
Min nTPM: 54.5
Sample B Female 54.5
Sample C Male 60.1
Sample D Male 61.0
Superior colliculi
nTPM: 58.4
Samples: 4

Max nTPM: 65.7
Min nTPM: 52.0
Sample A Female 52.0
Sample B Female 56.9
Sample C Male 58.9
Sample D Male 65.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.5
Samples: 4

Max nTPM: 24.7
Min nTPM: 20.9
Sample A Male 24.7
Sample B Male 20.9
Sample C Female 22.2
Sample D Female 22.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.5
641542 Antisense, RP_040914_01_G01, Mouse strain C57BL/6J (56 days, male) 2.5

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