HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:45.8 nTPM
HPA Brain:29.5 nTPM
GTEx:45.8 nTPM
FANTOM5:58.2 Scaled Tags Per Million
Pig:56.4 nTPM
Mouse:30.5 nTPM
Allen mouse:10.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA050975
Glial cells Medium
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 29.5
Sample id Sample description nTPM
Hippocampus
nTPM: 29.4
2529 Female, age 94, left hemisphere 35.9
2621 Female, age 67, right hemisphere 30.9
1898 Male, age 80, left hemisphere 29.4
2148 Female, age 91, left hemisphere 28.2
1911 Female, age 85, right hemisphere 26.4
1855 Male, age 76, left hemisphere 25.5
Dentate gyrus
nTPM: 28.8
2530 Female, age 94, left hemisphere 34.5
2531 Female, age 67, both hemispheres 32.5
2010 Male, age 76, both hemispheres 30.6
2246 Female, age 85, both hemispheres 29.4
1927 Female, age 91, both hemispheres 23.3
2528 Male, age 74, both hemispheres 22.7
Entorhinal gyrus
nTPM: 28.6
2117 Female, age 91, right hemisphere 30.8
2686 Male, age 75, right hemisphere 30.6
1787 Male, age 76, left hemisphere 30.4
2764 Male, age 80, right hemisphere 29.7
1938 Female, age 85, left hemisphere 26.3
2613 Female, age 94, left hemisphere 23.9
Hippocampus, CA1
nTPM: 27.7
2749 Male, age 80, left hemisphere 31.8
1873 Female, age 85, both hemispheres 30.8
2527 Male, age 74, both hemispheres 30.2
2082 Female, age 91, right hemisphere 23.6
2045 Male, age 76, both hemispheres 22.3
Hippocampus, CA2
nTPM: 27.8
1963 Male, age 80, left hemisphere 31.0
2437 Female, age 94, left hemisphere 30.6
1892 Male, age 76, both hemispheres 26.9
1940 Female, age 85, left hemisphere 26.9
2113 Female, age 91, right hemisphere 25.6
2249 Male, age 74, both hemispheres 25.5
Hippocampus, CA3
nTPM: 26.1
2861 Female, age 67, both hemispheres 30.6
1891 Female, age 85, both hemispheres 26.7
2137 Male, age 80, left hemisphere 25.3
1867 Male, age 76, both hemispheres 24.9
2436 Male, age 74, both hemispheres 24.8
2620 Female, age 94, left hemisphere 24.3
Parahippocampal cortex
nTPM: 28.0
2245 Female, age 91, both hemispheres 34.7
2532 Female, age 72, left hemisphere 32.6
2622 Female, age 67, right hemisphere 32.5
2018 Male, age 76, both hemispheres 28.0
2250 Female, age 67, right hemisphere 27.7
1990 Female, age 91, right hemisphere 27.2
1850 Male, age 80, both hemispheres 26.2
1933 Female, age 85, both hemispheres 25.6
2692 Male, age 74, both hemispheres 25.3
2693 Female, age 94, both hemispheres 19.9
Perirhinal gyrus
nTPM: 26.2
1794 Male, age 80, right hemisphere 28.3
1841 Female, age 85, right hemisphere 27.0
2848 Male, age 76, right hemisphere 26.8
1847 Female, age 91, left hemisphere 25.4
2521 Female, age 94, right hemisphere 23.4
Subiculum
nTPM: 29.5
2438 Female, age 94, left hemisphere 39.5
1977 Female, age 85, both hemispheres 30.3
1901 Male, age 80, both hemispheres 28.5
2042 Male, age 76, both hemispheres 27.7
2619 Male, age 74, both hemispheres 26.8
2729 Female, age 91, right hemisphere 24.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 45.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 45.8
Samples: 197

Max nTPM: 82.6
Min nTPM: 26.9
Std nTPM: 6.9
Median nTPM: 44.7
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 82.6
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 70.4
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 68.2
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 64.4
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 64.3
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 62.9
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 62.0
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 60.2
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 59.8
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 58.4
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 57.4
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 58.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 58.2
FF:10153-102I9 76 years, female 59.4
FF:10169-103B7 60 years, female 57.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 56.4
Pig sample Sample description nTPM
Subiculum
nTPM: 53.1
Samples: 4

Max nTPM: 56.8
Min nTPM: 49.4
Sample A Female 56.8
Sample B Female 49.4
Sample C Male 54.8
Sample D Male 51.2
Dorsal hippocampus
nTPM: 56.5
Samples: 4

Max nTPM: 60.0
Min nTPM: 53.1
Sample A Female 60.0
Sample B Female 53.1
Sample C Male 59.1
Sample D Male 53.6
Entorhinal cortex
nTPM: 50.0
Samples: 4

Max nTPM: 53.2
Min nTPM: 46.5
Sample A Female 52.3
Sample B Female 48.1
Sample C Male 46.5
Sample D Male 53.2
Ventral hippocampus
nTPM: 55.0
Samples: 4

Max nTPM: 62.4
Min nTPM: 45.3
Sample A Female 53.6
Sample B Female 45.3
Sample C Male 58.7
Sample D Male 62.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 30.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 30.1
Samples: 4

Max nTPM: 33.2
Min nTPM: 27.8
Sample A Male 27.8
Sample B Male 29.0
Sample C Female 30.2
Sample D Female 33.2
Hippocampal formation
nTPM: 30.5
Samples: 4

Max nTPM: 33.8
Min nTPM: 27.7
Sample A Male 27.7
Sample B Male 33.8
Sample C Female 30.3
Sample D Female 30.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 10.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 10.6
641542 Antisense, RP_040914_01_G01, Mouse strain C57BL/6J (56 days, male) 10.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org