MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.3 nTPM
HPA Brain:68.5 nTPM
GTEx:13.3 nTPM
FANTOM5:56.7 Scaled Tags Per Million
Pig:41.2 nTPM
Mouse:39.0 nTPM
Allen mouse:9.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 68.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 63.4
2586 Male, age 75, left hemisphere 83.9
2666 Male, age 74, left hemisphere 73.9
1827 Male, age 72, unknown 68.8
2219 Male, age 76, both hemispheres 68.0
2828 Female, age 72, unknown 63.6
2019 Male, age 18, unknown 59.9
1833 Male, age 53, unknown 58.0
1830 Male, age 51, unknown 56.5
1870 Female, age 42, unknown 52.7
2411 Female, age 72, unknown 48.5
Dorsal raphe nucleus
nTPM: 47.6
2750 Male, age 76, both hemispheres 52.6
1828 Male, age 53, unknown 47.8
2047 Male, age 72, unknown 47.5
2016 Female, age 72, unknown 45.0
2298 Female, age 72, unknown 45.0
Inferior colliculus
nTPM: 59.8
2849 Male, age 72, unknown 68.1
1890 Male, age 53, unknown 60.9
2097 Female, age 72, unknown 59.2
1848 Female, age 42, unknown 50.9
Median raphe nucleus
nTPM: 54.7
2220 Male, age 76, midline 54.7
Periaquaductal grey, anterior
nTPM: 67.8
1795 Male, age 51, unknown 76.3
1947 Male, age 18, unknown 64.7
2502 Female, age 75, unknown 62.5
Periaquaductal grey, dorsal
nTPM: 56.2
2850 Male, age 76, both hemispheres 61.8
1831 Male, age 72, unknown 61.1
2464 Female, age 72, unknown 53.3
1840 Male, age 53, unknown 48.5
Periaquaductal grey, lateral
nTPM: 61.8
2140 Male, age 76, both hemispheres 70.1
2053 Male, age 18, unknown 58.3
2272 Male, age 74, both hemispheres 56.9
Pretectal area
nTPM: 68.5
1816 Male, age 51, unknown 86.8
2407 Male, age 75, both hemispheres 77.9
1815 Male, age 53, unknown 75.4
1817 Female, age 42, unknown 74.1
2007 Male, age 72, unknown 73.5
2667 Female, age 75, unknown 69.8
1944 Female, age 72, unknown 66.5
2316 Male, age 76, right hemisphere 63.6
2825 Male, age 18, unknown 58.7
2224 Female, age 72, unknown 57.8
2273 Male, age 74, both hemispheres 49.3
Red nucleus
nTPM: 60.6
2584 Male, age 75, left hemisphere 85.6
2588 Male, age 74, left hemisphere 71.4
2785 Male, age 18, unknown 68.6
2725 Female, age 75, unknown 60.9
1904 Male, age 53, unknown 60.4
2227 Male, age 72, unknown 59.2
1865 Male, age 51, unknown 58.4
2769 Male, age 72, unknown 56.4
1954 Female, age 42, unknown 53.6
2823 Male, age 76, right hemisphere 53.3
2503 Female, age 72, unknown 51.8
1821 Female, age 72, unknown 47.3
Substantia nigra
nTPM: 63.6
2583 Male, age 75, right hemisphere 81.6
1916 Female, age 42, unknown 75.2
2590 Female, age 75, unknown 66.3
2665 Male, age 74, both hemispheres 65.2
1889 Female, age 72, unknown 64.4
1851 Male, age 51, unknown 63.5
2699 Male, age 18, unknown 62.1
1941 Male, age 53, unknown 60.2
2409 Female, age 72, unknown 49.2
2241 Male, age 72, unknown 48.8
Superior colliculus
nTPM: 64.3
2664 Male, age 75, both hemispheres 78.8
2261 Male, age 18, unknown 74.9
1796 Male, age 53, unknown 74.2
1913 Female, age 42, unknown 65.5
2668 Female, age 75, unknown 62.4
1995 Male, age 72, unknown 59.1
1895 Male, age 76, right hemisphere 58.8
2087 Female, age 72, unknown 56.7
2587 Male, age 74, left hemisphere 56.6
1839 Male, age 51, unknown 55.7
Ventral tegmental area
nTPM: 59.6
2223 Female, age 72, unknown 69.2
2218 Male, age 76, both hemispheres 64.9
1915 Female, age 42, unknown 59.7
2021 Male, age 53, unknown 57.2
2410 Female, age 72, unknown 53.9
1942 Male, age 51, unknown 52.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 13.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.3
Samples: 139

Max nTPM: 26.8
Min nTPM: 6.6
Std nTPM: 3.1
Median nTPM: 13.1
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 26.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 22.6
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 22.4
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 20.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 19.3
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 18.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 18.8
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 18.0
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 17.7
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 17.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 17.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 56.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 56.7
FF:10158-103A5 76 years, female 56.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 41.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 24.6
Samples: 4

Max nTPM: 27.3
Min nTPM: 21.3
Sample A Female 23.4
Sample B Female 26.4
Sample C Male 27.3
Sample D Male 21.3
Midbrain
nTPM: 41.2
Samples: 4

Max nTPM: 75.8
Min nTPM: 20.0
Sample A Female 20.6
Sample B Female 20.0
Sample C Male 75.8
Sample D Male 48.5
Periaqueductal gray
nTPM: 21.3
Samples: 3

Max nTPM: 24.6
Min nTPM: 18.2
Sample B Female 18.2
Sample C Male 24.6
Sample D Male 21.1
Superior colliculi
nTPM: 40.7
Samples: 4

Max nTPM: 50.4
Min nTPM: 35.1
Sample A Female 37.4
Sample B Female 35.1
Sample C Male 50.4
Sample D Male 39.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 39.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 39.0
Samples: 4

Max nTPM: 42.0
Min nTPM: 37.3
Sample A Male 37.7
Sample B Male 37.3
Sample C Female 42.0
Sample D Female 38.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.1
67810540 Antisense, RP_040922_01_F09, Mouse strain C57BL/6J (56 days, male) 13.4
79632257 Antisense, RP_071204_01_A12, Mouse strain C57BL/6J (56 days, male) 4.7

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