MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:58.9 nTPM
HPA Brain:72.7 nTPM
GTEx:58.9 nTPM
FANTOM5:32.5 Scaled Tags Per Million
Pig:17.0 nTPM
Mouse:46.0 nTPM
Allen mouse:1.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 72.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.5
2586 Male, age 75, left hemisphere 93.9
2828 Female, age 72, unknown 67.5
1827 Male, age 72, unknown 67.4
2666 Male, age 74, left hemisphere 56.8
1870 Female, age 42, unknown 46.0
2219 Male, age 76, both hemispheres 43.7
1830 Male, age 51, unknown 41.0
1833 Male, age 53, unknown 41.0
2411 Female, age 72, unknown 40.5
2019 Male, age 18, unknown 37.2
Dorsal raphe nucleus
nTPM: 47.7
2047 Male, age 72, unknown 52.0
2298 Female, age 72, unknown 52.0
2750 Male, age 76, both hemispheres 49.5
1828 Male, age 53, unknown 45.0
2016 Female, age 72, unknown 40.1
Inferior colliculus
nTPM: 44.1
1848 Female, age 42, unknown 46.8
2849 Male, age 72, unknown 46.7
2097 Female, age 72, unknown 42.1
1890 Male, age 53, unknown 40.9
Median raphe nucleus
nTPM: 53.5
2220 Male, age 76, midline 53.5
Periaquaductal grey, anterior
nTPM: 72.7
1795 Male, age 51, unknown 80.0
1947 Male, age 18, unknown 77.6
2502 Female, age 75, unknown 60.5
Periaquaductal grey, dorsal
nTPM: 44.6
1840 Male, age 53, unknown 52.6
1831 Male, age 72, unknown 43.5
2850 Male, age 76, both hemispheres 42.4
2464 Female, age 72, unknown 39.9
Periaquaductal grey, lateral
nTPM: 47.5
2053 Male, age 18, unknown 56.3
2140 Male, age 76, both hemispheres 44.4
2272 Male, age 74, both hemispheres 41.9
Pretectal area
nTPM: 51.6
1816 Male, age 51, unknown 73.7
1817 Female, age 42, unknown 57.2
2007 Male, age 72, unknown 55.5
1944 Female, age 72, unknown 55.3
2825 Male, age 18, unknown 52.5
2407 Male, age 75, both hemispheres 52.0
1815 Male, age 53, unknown 51.3
2667 Female, age 75, unknown 50.9
2224 Female, age 72, unknown 47.5
2273 Male, age 74, both hemispheres 37.6
2316 Male, age 76, right hemisphere 34.0
Red nucleus
nTPM: 46.6
2584 Male, age 75, left hemisphere 65.3
2588 Male, age 74, left hemisphere 52.7
2503 Female, age 72, unknown 51.1
2725 Female, age 75, unknown 49.3
1954 Female, age 42, unknown 45.6
1904 Male, age 53, unknown 45.1
2769 Male, age 72, unknown 44.4
2227 Male, age 72, unknown 43.1
1865 Male, age 51, unknown 42.2
1821 Female, age 72, unknown 41.0
2823 Male, age 76, right hemisphere 40.3
2785 Male, age 18, unknown 39.5
Substantia nigra
nTPM: 53.6
2665 Male, age 74, both hemispheres 69.8
1916 Female, age 42, unknown 68.2
2583 Male, age 75, right hemisphere 59.1
1851 Male, age 51, unknown 55.4
2590 Female, age 75, unknown 55.1
1889 Female, age 72, unknown 51.0
1941 Male, age 53, unknown 47.9
2699 Male, age 18, unknown 46.0
2241 Male, age 72, unknown 44.4
2409 Female, age 72, unknown 39.1
Superior colliculus
nTPM: 56.3
1796 Male, age 53, unknown 78.5
2261 Male, age 18, unknown 76.1
2664 Male, age 75, both hemispheres 67.4
2668 Female, age 75, unknown 58.4
2087 Female, age 72, unknown 58.0
1913 Female, age 42, unknown 49.3
1839 Male, age 51, unknown 45.0
1995 Male, age 72, unknown 44.2
1895 Male, age 76, right hemisphere 44.0
2587 Male, age 74, left hemisphere 41.7
Ventral tegmental area
nTPM: 51.2
2218 Male, age 76, both hemispheres 54.5
1915 Female, age 42, unknown 54.0
2410 Female, age 72, unknown 51.7
1942 Male, age 51, unknown 50.2
2223 Female, age 72, unknown 49.3
2021 Male, age 53, unknown 47.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 58.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 58.9
Samples: 139

Max nTPM: 117.9
Min nTPM: 26.3
Std nTPM: 14.0
Median nTPM: 57.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 117.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 103.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 99.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 94.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 92.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 87.0
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 81.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 79.8
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 78.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 78.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 78.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.5
FF:10158-103A5 76 years, female 32.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 14.7
Samples: 4

Max nTPM: 16.5
Min nTPM: 11.0
Sample A Female 16.5
Sample B Female 11.0
Sample C Male 15.5
Sample D Male 15.7
Midbrain
nTPM: 17.0
Samples: 4

Max nTPM: 20.4
Min nTPM: 13.3
Sample A Female 20.4
Sample B Female 13.3
Sample C Male 16.9
Sample D Male 17.3
Periaqueductal gray
nTPM: 11.8
Samples: 3

Max nTPM: 12.3
Min nTPM: 10.9
Sample B Female 12.3
Sample C Male 12.3
Sample D Male 10.9
Superior colliculi
nTPM: 15.5
Samples: 4

Max nTPM: 18.1
Min nTPM: 9.8
Sample A Female 18.0
Sample B Female 9.8
Sample C Male 16.0
Sample D Male 18.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 46.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 46.0
Samples: 4

Max nTPM: 49.3
Min nTPM: 44.0
Sample A Male 49.3
Sample B Male 44.7
Sample C Female 44.0
Sample D Female 45.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
70565276 Antisense, RP_050623_04_F04, Mouse strain C57BL/6J (56 days, male) 2.6
75041563 Antisense, RP_060412_04_F07, Mouse strain C57BL/6J (56 days, male) 2.1
70919878 Antisense, RP_050713_02_C02, Mouse strain C57BL/6J (56 days, male) 0.7

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