MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.6 nTPM
HPA Brain:21.1 nTPM
GTEx:26.6 nTPM
FANTOM5:25.1 Scaled Tags Per Million
Pig:18.8 nTPM
Mouse:15.8 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 21.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.0
2411 Female, age 72, unknown 24.6
2586 Male, age 75, left hemisphere 24.5
1870 Female, age 42, unknown 23.4
2828 Female, age 72, unknown 19.8
1833 Male, age 53, unknown 19.6
1830 Male, age 51, unknown 19.1
1827 Male, age 72, unknown 18.5
2019 Male, age 18, unknown 18.1
2666 Male, age 74, left hemisphere 17.3
2219 Male, age 76, both hemispheres 15.1
Dorsal raphe nucleus
nTPM: 18.8
2750 Male, age 76, both hemispheres 22.7
2298 Female, age 72, unknown 20.0
2016 Female, age 72, unknown 17.7
1828 Male, age 53, unknown 17.2
2047 Male, age 72, unknown 16.5
Inferior colliculus
nTPM: 16.9
1848 Female, age 42, unknown 19.0
2097 Female, age 72, unknown 16.7
1890 Male, age 53, unknown 16.0
2849 Male, age 72, unknown 15.8
Median raphe nucleus
nTPM: 16.5
2220 Male, age 76, midline 16.5
Periaquaductal grey, anterior
nTPM: 18.4
1795 Male, age 51, unknown 19.0
1947 Male, age 18, unknown 18.4
2502 Female, age 75, unknown 18.0
Periaquaductal grey, dorsal
nTPM: 17.3
2464 Female, age 72, unknown 17.9
1831 Male, age 72, unknown 17.6
2850 Male, age 76, both hemispheres 17.4
1840 Male, age 53, unknown 16.3
Periaquaductal grey, lateral
nTPM: 17.9
2272 Male, age 74, both hemispheres 19.1
2053 Male, age 18, unknown 18.2
2140 Male, age 76, both hemispheres 16.5
Pretectal area
nTPM: 19.0
2273 Male, age 74, both hemispheres 22.7
1817 Female, age 42, unknown 21.1
1815 Male, age 53, unknown 20.7
2007 Male, age 72, unknown 20.3
2667 Female, age 75, unknown 19.0
1944 Female, age 72, unknown 18.8
2825 Male, age 18, unknown 18.5
2316 Male, age 76, right hemisphere 18.3
2224 Female, age 72, unknown 18.1
2407 Male, age 75, both hemispheres 16.0
1816 Male, age 51, unknown 15.5
Red nucleus
nTPM: 21.1
1904 Male, age 53, unknown 26.0
1865 Male, age 51, unknown 25.3
2785 Male, age 18, unknown 23.4
2503 Female, age 72, unknown 22.4
2227 Male, age 72, unknown 21.9
1821 Female, age 72, unknown 21.5
2823 Male, age 76, right hemisphere 21.5
2769 Male, age 72, unknown 21.4
1954 Female, age 42, unknown 21.0
2725 Female, age 75, unknown 18.3
2588 Male, age 74, left hemisphere 15.7
2584 Male, age 75, left hemisphere 15.1
Substantia nigra
nTPM: 16.0
1851 Male, age 51, unknown 19.8
2699 Male, age 18, unknown 18.0
2583 Male, age 75, right hemisphere 17.2
1889 Female, age 72, unknown 16.7
2665 Male, age 74, both hemispheres 16.6
1941 Male, age 53, unknown 15.7
1916 Female, age 42, unknown 15.6
2590 Female, age 75, unknown 15.5
2241 Male, age 72, unknown 13.5
2409 Female, age 72, unknown 11.6
Superior colliculus
nTPM: 19.5
1995 Male, age 72, unknown 24.6
1913 Female, age 42, unknown 24.4
2668 Female, age 75, unknown 22.9
1796 Male, age 53, unknown 19.4
2587 Male, age 74, left hemisphere 18.5
1895 Male, age 76, right hemisphere 18.0
1839 Male, age 51, unknown 17.6
2087 Female, age 72, unknown 17.1
2261 Male, age 18, unknown 16.7
2664 Male, age 75, both hemispheres 15.7
Ventral tegmental area
nTPM: 19.5
2223 Female, age 72, unknown 24.8
2410 Female, age 72, unknown 22.1
1915 Female, age 42, unknown 18.2
2021 Male, age 53, unknown 17.5
2218 Male, age 76, both hemispheres 17.3
1942 Male, age 51, unknown 17.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 26.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.6
Samples: 139

Max nTPM: 53.0
Min nTPM: 11.1
Std nTPM: 8.5
Median nTPM: 25.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 53.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 50.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 49.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 48.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 45.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 43.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 42.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 42.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 41.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 41.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 40.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 25.1
FF:10158-103A5 76 years, female 25.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 18.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.8
Samples: 4

Max nTPM: 26.7
Min nTPM: 12.1
Sample A Female 26.7
Sample B Female 13.8
Sample C Male 22.7
Sample D Male 12.1
Midbrain
nTPM: 16.3
Samples: 4

Max nTPM: 19.3
Min nTPM: 13.8
Sample A Female 19.3
Sample B Female 17.3
Sample C Male 13.8
Sample D Male 14.6
Periaqueductal gray
nTPM: 14.6
Samples: 3

Max nTPM: 17.4
Min nTPM: 12.5
Sample B Female 12.5
Sample C Male 17.4
Sample D Male 13.8
Superior colliculi
nTPM: 16.9
Samples: 4

Max nTPM: 21.0
Min nTPM: 14.6
Sample A Female 21.0
Sample B Female 15.5
Sample C Male 14.6
Sample D Male 16.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 15.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.8
Samples: 4

Max nTPM: 17.5
Min nTPM: 13.8
Sample A Male 17.5
Sample B Male 17.1
Sample C Female 14.9
Sample D Female 13.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
564638 Antisense, RP_040826_01_A04, Mouse strain C57BL/6J (56 days, male) 0.1

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