HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:102.0 nTPM
HPA Brain:83.5 nTPM
GTEx:102.0 nTPM
FANTOM5:36.3 Scaled Tags Per Million
Pig:28.0 nTPM
Mouse:80.8 nTPM
Allen mouse:5.2 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 83.5
Sample id Sample description nTPM
Hippocampus
nTPM: 74.3
1898 Male, age 80, left hemisphere 99.4
1855 Male, age 76, left hemisphere 74.7
2148 Female, age 91, left hemisphere 71.1
2529 Female, age 94, left hemisphere 68.4
2621 Female, age 67, right hemisphere 67.6
1911 Female, age 85, right hemisphere 64.8
Dentate gyrus
nTPM: 77.0
2010 Male, age 76, both hemispheres 90.1
1927 Female, age 91, both hemispheres 87.5
2530 Female, age 94, left hemisphere 83.5
2528 Male, age 74, both hemispheres 77.3
2246 Female, age 85, both hemispheres 62.0
2531 Female, age 67, both hemispheres 61.5
Entorhinal gyrus
nTPM: 71.0
2764 Male, age 80, right hemisphere 78.0
1938 Female, age 85, left hemisphere 76.3
1787 Male, age 76, left hemisphere 73.3
2613 Female, age 94, left hemisphere 71.5
2117 Female, age 91, right hemisphere 65.4
2686 Male, age 75, right hemisphere 61.6
Hippocampus, CA1
nTPM: 83.5
2749 Male, age 80, left hemisphere 130.3
1873 Female, age 85, both hemispheres 82.9
2045 Male, age 76, both hemispheres 71.1
2527 Male, age 74, both hemispheres 67.6
2082 Female, age 91, right hemisphere 65.6
Hippocampus, CA2
nTPM: 77.3
1963 Male, age 80, left hemisphere 109.1
1892 Male, age 76, both hemispheres 89.8
2249 Male, age 74, both hemispheres 70.4
2437 Female, age 94, left hemisphere 69.9
2113 Female, age 91, right hemisphere 64.4
1940 Female, age 85, left hemisphere 60.2
Hippocampus, CA3
nTPM: 78.8
2137 Male, age 80, left hemisphere 97.7
2436 Male, age 74, both hemispheres 79.7
2620 Female, age 94, left hemisphere 78.2
1867 Male, age 76, both hemispheres 77.8
2861 Female, age 67, both hemispheres 75.0
1891 Female, age 85, both hemispheres 64.2
Parahippocampal cortex
nTPM: 65.7
1850 Male, age 80, both hemispheres 78.4
2018 Male, age 76, both hemispheres 73.0
1933 Female, age 85, both hemispheres 72.8
1990 Female, age 91, right hemisphere 68.1
2245 Female, age 91, both hemispheres 64.2
2250 Female, age 67, right hemisphere 63.5
2693 Female, age 94, both hemispheres 60.2
2692 Male, age 74, both hemispheres 59.8
2532 Female, age 72, left hemisphere 58.8
2622 Female, age 67, right hemisphere 58.8
Perirhinal gyrus
nTPM: 77.0
1847 Female, age 91, left hemisphere 94.3
1794 Male, age 80, right hemisphere 84.3
1841 Female, age 85, right hemisphere 73.8
2521 Female, age 94, right hemisphere 69.8
2848 Male, age 76, right hemisphere 63.0
Subiculum
nTPM: 64.6
1901 Male, age 80, both hemispheres 73.0
1977 Female, age 85, both hemispheres 71.4
2729 Female, age 91, right hemisphere 66.8
2042 Male, age 76, both hemispheres 64.0
2619 Male, age 74, both hemispheres 62.6
2438 Female, age 94, left hemisphere 49.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 102.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 102.0
Samples: 197

Max nTPM: 186.1
Min nTPM: 42.5
Std nTPM: 27.4
Median nTPM: 100.6
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 186.1
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 172.7
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 170.6
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 170.4
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 164.6
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 157.9
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 152.7
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 151.8
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 150.9
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 150.6
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 150.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 36.3
FF:10169-103B7 60 years, female 45.6
FF:10153-102I9 76 years, female 26.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 28.0
Pig sample Sample description nTPM
Subiculum
nTPM: 24.0
Samples: 4

Max nTPM: 29.0
Min nTPM: 20.8
Sample A Female 29.0
Sample B Female 21.9
Sample C Male 24.2
Sample D Male 20.8
Dorsal hippocampus
nTPM: 27.1
Samples: 4

Max nTPM: 31.4
Min nTPM: 18.9
Sample A Female 31.4
Sample B Female 31.2
Sample C Male 18.9
Sample D Male 26.8
Entorhinal cortex
nTPM: 25.4
Samples: 4

Max nTPM: 26.2
Min nTPM: 24.2
Sample A Female 25.4
Sample B Female 26.2
Sample C Male 25.6
Sample D Male 24.2
Ventral hippocampus
nTPM: 28.1
Samples: 4

Max nTPM: 31.5
Min nTPM: 22.5
Sample A Female 28.5
Sample B Female 22.5
Sample C Male 31.5
Sample D Male 29.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 80.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 67.5
Samples: 4

Max nTPM: 72.3
Min nTPM: 61.8
Sample A Male 61.8
Sample B Male 69.8
Sample C Female 72.3
Sample D Female 66.0
Hippocampal formation
nTPM: 80.8
Samples: 4

Max nTPM: 86.1
Min nTPM: 75.5
Sample A Male 81.9
Sample B Male 75.5
Sample C Female 79.6
Sample D Female 86.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 5.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.2
77910727 Antisense, RP_070208_04_F08, Mouse strain C57BL/6J (56 days, male) 8.7
583862 Antisense, RP_040831_01_C01, Mouse strain C57BL/6J (56 days, male) 1.8

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