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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
88.1
nTPM
Monaco:
55.1
nTPM
Schmiedel:
79.5
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
88.1
HPA sample
nTPM
gdT-cell nTPM: 62.0
Samples: 6
Max nTPM: 70.3
Min nTPM: 50.3
P10809_1007
50.3
P10809_1022
65.0
P10809_1041
70.3
P10809_1060
61.7
P10809_1077
66.3
P10809_1098
58.1
MAIT T-cell nTPM: 77.5
Samples: 6
Max nTPM: 116.5
Min nTPM: 53.9
P10809_1006
53.9
P10809_1024
67.4
P10809_1043
91.6
P10809_1062
70.6
P10809_1083
64.9
P10809_1097
116.5
Memory CD4 T-cell nTPM: 70.5
Samples: 6
Max nTPM: 92.5
Min nTPM: 56.1
P10809_1014
58.9
P10809_1026
75.3
P10809_1045
92.5
P10809_1064
64.6
P10809_1086
56.1
P10809_1113
75.8
Memory CD8 T-cell nTPM: 71.2
Samples: 5
Max nTPM: 93.5
Min nTPM: 58.0
P10809_1012
58.7
P10809_1027
65.4
P10809_1046
93.5
P10809_1065
58.0
P10809_1111
80.2
Naive CD4 T-cell nTPM: 65.8
Samples: 6
Max nTPM: 85.2
Min nTPM: 46.6
P10809_1015
46.6
P10809_1030
65.0
P10809_1049
85.2
P10809_1068
64.6
P10809_1085
62.3
P10809_1112
71.0
Naive CD8 T-cell nTPM: 64.6
Samples: 6
Max nTPM: 77.5
Min nTPM: 56.7
P10809_1016
58.9
P10809_1031
77.5
P10809_1050
65.4
P10809_1069
56.7
P10809_1087
61.4
P10809_1110
67.6
T-reg nTPM: 88.1
Samples: 6
Max nTPM: 103.6
Min nTPM: 71.1
P10809_1018
71.1
P10809_1037
91.5
P10809_1056
103.6
P10809_1075
72.4
P10809_1094
90.3
P10809_1106
99.5
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
55.1
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 45.1
Samples: 4
Max nTPM: 72.5
Min nTPM: 30.5
RHH5202_R3573
41.8
RHH5230_R3602
35.6
RHH5259_R3631
30.5
RHH5288_R3660
72.5
Effector memory CD8 T-cell nTPM: 37.9
Samples: 4
Max nTPM: 52.6
Min nTPM: 28.4
RHH5203_R3574
52.6
RHH5231_R3603
31.2
RHH5260_R3632
39.5
RHH5289_R3661
28.4
MAIT T-cell nTPM: 40.7
Samples: 4
Max nTPM: 61.2
Min nTPM: 29.4
RHH5233_R3605
29.4
RHH5205_R3576
34.2
RHH5262_R3634
37.9
RHH5297_R3663
61.2
Memory CD4 T-cell TFH nTPM: 55.1
Samples: 4
Max nTPM: 91.2
Min nTPM: 39.3
RHH5300_R3666
45.6
RHH5236_R3608
91.2
RHH5265_R3637
39.3
RHH5208_R3579
44.2
Memory CD4 T-cell Th1 nTPM: 50.3
Samples: 4
Max nTPM: 71.7
Min nTPM: 37.7
RHH5210_R3581
44.2
RHH5302_R3668
71.7
RHH5238_R3610
47.7
RHH5267_R3639
37.7
Memory CD4 T-cell Th1/Th17 nTPM: 44.5
Samples: 4
Max nTPM: 68.6
Min nTPM: 26.9
RHH5303_R3669
68.6
RHH5211_R3582
52.1
RHH5239_R3611
26.9
RHH5268_R3640
30.5
Memory CD4 T-cell Th17 nTPM: 32.7
Samples: 4
Max nTPM: 44.5
Min nTPM: 23.0
RHH5304_R3670
34.0
RHH5212_R3583
44.5
RHH5240_R3612
29.1
RHH5269_R3641
23.0
Memory CD4 T-cell Th2 nTPM: 40.7
Samples: 4
Max nTPM: 52.9
Min nTPM: 26.8
RHH5305_R3671
42.8
RHH5213_R3584
40.1
RHH5241_R3613
52.9
RHH5270_R3642
26.8
Naive CD4 T-cell nTPM: 51.1
Samples: 4
Max nTPM: 62.7
Min nTPM: 42.0
RHH5306_R3672
47.0
RHH5214_R3585
62.7
RHH5242_R3614
52.8
RHH5271_R3643
42.0
Naive CD8 T-cell nTPM: 41.2
Samples: 4
Max nTPM: 45.5
Min nTPM: 31.5
RHH5201_R3572
43.9
RHH5229_R3601
31.5
RHH5258_R3630
45.5
RHH5287_R3659
44.0
Non-Vd2 gdTCR nTPM: 37.5
Samples: 4
Max nTPM: 60.3
Min nTPM: 17.9
RHH5235_R3607
17.9
RHH5264_R3636
44.2
RHH5207_R3578
27.5
RHH5299_R3665
60.3
T-reg nTPM: 52.0
Samples: 4
Max nTPM: 73.1
Min nTPM: 34.2
RHH5301_R3667
73.1
RHH5237_R3609
63.2
RHH5266_R3638
34.2
RHH5209_R3580
37.3
Terminal effector memory CD4 T-cell nTPM: 36.6
Samples: 2
Max nTPM: 39.0
Min nTPM: 34.1
RHH5243_R3615
34.1
RHH5272_R3644
39.0
Terminal effector memory CD8 T-cell nTPM: 50.6
Samples: 4
Max nTPM: 79.8
Min nTPM: 30.1
RHH5232_R3604
38.2
RHH5204_R3575
79.8
RHH5261_R3633
30.1
RHH5296_R3662
54.4
Vd2 gdTCR nTPM: 49.3
Samples: 4
Max nTPM: 75.0
Min nTPM: 24.4
RHH5234_R3606
35.4
RHH5206_R3577
62.5
RHH5263_R3635
24.4
RHH5298_R3664
75.0
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
