MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.0 nTPM
HPA Brain:150.2 nTPM
GTEx:11.0 nTPM
FANTOM5:2.7 Scaled Tags Per Million
Pig:34.4 nTPM
Mouse:91.8 nTPM
Allen mouse:11.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 150.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 89.8
2666 Male, age 74, left hemisphere 217.2
2828 Female, age 72, unknown 144.5
1827 Male, age 72, unknown 133.7
2019 Male, age 18, unknown 98.0
2586 Male, age 75, left hemisphere 67.3
1870 Female, age 42, unknown 60.0
2219 Male, age 76, both hemispheres 53.0
2411 Female, age 72, unknown 48.0
1833 Male, age 53, unknown 40.6
1830 Male, age 51, unknown 36.1
Dorsal raphe nucleus
nTPM: 42.1
2298 Female, age 72, unknown 70.5
2750 Male, age 76, both hemispheres 45.2
2047 Male, age 72, unknown 35.7
1828 Male, age 53, unknown 30.2
2016 Female, age 72, unknown 28.8
Inferior colliculus
nTPM: 53.9
2097 Female, age 72, unknown 68.4
1848 Female, age 42, unknown 60.1
1890 Male, age 53, unknown 44.7
2849 Male, age 72, unknown 42.3
Median raphe nucleus
nTPM: 62.7
2220 Male, age 76, midline 62.7
Periaquaductal grey, anterior
nTPM: 133.3
1795 Male, age 51, unknown 180.0
1947 Male, age 18, unknown 149.7
2502 Female, age 75, unknown 70.2
Periaquaductal grey, dorsal
nTPM: 61.2
1840 Male, age 53, unknown 79.3
1831 Male, age 72, unknown 69.8
2464 Female, age 72, unknown 54.1
2850 Male, age 76, both hemispheres 41.6
Periaquaductal grey, lateral
nTPM: 46.2
2053 Male, age 18, unknown 54.2
2140 Male, age 76, both hemispheres 50.5
2272 Male, age 74, both hemispheres 34.0
Pretectal area
nTPM: 150.2
1816 Male, age 51, unknown 330.4
1815 Male, age 53, unknown 249.0
1817 Female, age 42, unknown 241.1
1944 Female, age 72, unknown 215.9
2007 Male, age 72, unknown 215.7
2667 Female, age 75, unknown 133.6
2224 Female, age 72, unknown 60.7
2316 Male, age 76, right hemisphere 59.2
2825 Male, age 18, unknown 54.3
2407 Male, age 75, both hemispheres 48.7
2273 Male, age 74, both hemispheres 43.5
Red nucleus
nTPM: 39.9
2785 Male, age 18, unknown 100.4
2584 Male, age 75, left hemisphere 53.0
2503 Female, age 72, unknown 43.0
2588 Male, age 74, left hemisphere 41.5
1954 Female, age 42, unknown 37.7
1904 Male, age 53, unknown 36.1
2823 Male, age 76, right hemisphere 34.8
1821 Female, age 72, unknown 28.1
1865 Male, age 51, unknown 27.0
2769 Male, age 72, unknown 26.7
2227 Male, age 72, unknown 26.2
2725 Female, age 75, unknown 24.0
Substantia nigra
nTPM: 54.3
1889 Female, age 72, unknown 158.5
2665 Male, age 74, both hemispheres 72.6
1916 Female, age 42, unknown 59.5
1851 Male, age 51, unknown 52.1
2583 Male, age 75, right hemisphere 45.7
2409 Female, age 72, unknown 41.1
2590 Female, age 75, unknown 35.4
2241 Male, age 72, unknown 34.6
1941 Male, age 53, unknown 26.2
2699 Male, age 18, unknown 17.2
Superior colliculus
nTPM: 127.9
2668 Female, age 75, unknown 314.4
2087 Female, age 72, unknown 203.6
1796 Male, age 53, unknown 192.3
1913 Female, age 42, unknown 118.5
2261 Male, age 18, unknown 115.6
1995 Male, age 72, unknown 95.3
2664 Male, age 75, both hemispheres 76.4
1895 Male, age 76, right hemisphere 67.8
1839 Male, age 51, unknown 54.5
2587 Male, age 74, left hemisphere 40.9
Ventral tegmental area
nTPM: 50.2
2218 Male, age 76, both hemispheres 62.8
1942 Male, age 51, unknown 57.0
2410 Female, age 72, unknown 52.3
1915 Female, age 42, unknown 48.2
2021 Male, age 53, unknown 47.6
2223 Female, age 72, unknown 33.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.0
Samples: 139

Max nTPM: 41.2
Min nTPM: 1.2
Std nTPM: 7.6
Median nTPM: 8.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 41.2
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 37.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 36.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 30.5
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 27.7
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 25.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 25.2
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 25.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 24.2
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 22.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 22.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.7
FF:10158-103A5 76 years, female 2.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 34.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.6
Samples: 4

Max nTPM: 20.5
Min nTPM: 2.8
Sample A Female 17.5
Sample B Female 9.5
Sample C Male 20.5
Sample D Male 2.8
Midbrain
nTPM: 25.7
Samples: 4

Max nTPM: 71.4
Min nTPM: 4.4
Sample A Female 4.4
Sample B Female 10.9
Sample C Male 71.4
Sample D Male 15.9
Periaqueductal gray
nTPM: 13.7
Samples: 3

Max nTPM: 19.7
Min nTPM: 10.4
Sample B Female 11.0
Sample C Male 19.7
Sample D Male 10.4
Superior colliculi
nTPM: 34.4
Samples: 4

Max nTPM: 69.7
Min nTPM: 16.8
Sample A Female 16.8
Sample B Female 22.6
Sample C Male 69.7
Sample D Male 28.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 91.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 91.9
Samples: 4

Max nTPM: 97.6
Min nTPM: 86.9
Sample A Male 86.9
Sample B Male 91.0
Sample C Female 97.6
Sample D Female 91.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.4
75042242 Antisense, RP_051219_02_C11, Mouse strain C57BL/6J (56 days, male) 14.0
74512027 Antisense, RP_060220_03_D04, Mouse strain C57BL/6J (56 days, male) 10.9
71210877 Antisense, RP_050810_04_G02, Mouse strain C57BL/6J (56 days, male) 9.2
74000546 Antisense, RP_051219_02_C11, Mouse strain C57BL/6J (56 days, male) 7.0

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