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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
11.9
nTPM
Monaco:
57.6
nTPM
Schmiedel:
49.6
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
11.9
HPA sample
nTPM
gdT-cell nTPM: 11.9
Samples: 6
Max nTPM: 18.5
Min nTPM: 2.9
P10809_1007
2.9
P10809_1022
18.5
P10809_1041
6.0
P10809_1060
17.4
P10809_1077
16.1
P10809_1098
10.5
MAIT T-cell nTPM: 10.6
Samples: 6
Max nTPM: 18.1
Min nTPM: 0.1
P10809_1006
0.1
P10809_1024
16.4
P10809_1043
8.9
P10809_1062
16.8
P10809_1083
18.1
P10809_1097
3.2
Memory CD4 T-cell nTPM: 10.6
Samples: 6
Max nTPM: 17.6
Min nTPM: 2.3
P10809_1014
2.3
P10809_1026
17.4
P10809_1045
4.7
P10809_1064
15.4
P10809_1086
17.6
P10809_1113
6.4
Memory CD8 T-cell nTPM: 10.0
Samples: 5
Max nTPM: 15.9
Min nTPM: 4.7
P10809_1012
4.7
P10809_1027
12.2
P10809_1046
8.1
P10809_1065
15.9
P10809_1111
9.0
Naive CD4 T-cell nTPM: 6.5
Samples: 6
Max nTPM: 16.0
Min nTPM: 1.6
P10809_1015
1.6
P10809_1030
6.4
P10809_1049
3.8
P10809_1068
8.0
P10809_1085
16.0
P10809_1112
3.4
Naive CD8 T-cell nTPM: 9.9
Samples: 6
Max nTPM: 20.3
Min nTPM: 3.2
P10809_1016
3.2
P10809_1031
8.6
P10809_1050
6.2
P10809_1069
15.1
P10809_1087
20.3
P10809_1110
5.8
T-reg nTPM: 8.7
Samples: 6
Max nTPM: 17.1
Min nTPM: 0.6
P10809_1018
0.6
P10809_1037
17.1
P10809_1056
3.9
P10809_1075
7.9
P10809_1094
17.0
P10809_1106
5.9
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
57.6
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 26.1
Samples: 4
Max nTPM: 48.3
Min nTPM: 6.1
RHH5202_R3573
6.1
RHH5230_R3602
26.2
RHH5259_R3631
48.3
RHH5288_R3660
23.9
Effector memory CD8 T-cell nTPM: 32.9
Samples: 4
Max nTPM: 58.8
Min nTPM: 4.8
RHH5203_R3574
10.2
RHH5231_R3603
58.8
RHH5260_R3632
57.6
RHH5289_R3661
4.8
MAIT T-cell nTPM: 30.0
Samples: 4
Max nTPM: 56.3
Min nTPM: 7.5
RHH5233_R3605
56.3
RHH5205_R3576
7.5
RHH5262_R3634
34.9
RHH5297_R3663
21.2
Memory CD4 T-cell TFH nTPM: 20.0
Samples: 4
Max nTPM: 32.5
Min nTPM: 7.2
RHH5300_R3666
7.2
RHH5236_R3608
32.5
RHH5265_R3637
26.9
RHH5208_R3579
13.5
Memory CD4 T-cell Th1 nTPM: 25.6
Samples: 4
Max nTPM: 47.3
Min nTPM: 6.9
RHH5210_R3581
6.9
RHH5302_R3668
12.7
RHH5238_R3610
35.5
RHH5267_R3639
47.3
Memory CD4 T-cell Th1/Th17 nTPM: 33.0
Samples: 4
Max nTPM: 57.7
Min nTPM: 2.9
RHH5303_R3669
30.9
RHH5211_R3582
2.9
RHH5239_R3611
57.7
RHH5268_R3640
40.3
Memory CD4 T-cell Th17 nTPM: 21.9
Samples: 4
Max nTPM: 35.8
Min nTPM: 8.0
RHH5304_R3670
8.0
RHH5212_R3583
12.0
RHH5240_R3612
31.8
RHH5269_R3641
35.8
Memory CD4 T-cell Th2 nTPM: 11.8
Samples: 4
Max nTPM: 22.3
Min nTPM: 0.9
RHH5305_R3671
8.3
RHH5213_R3584
0.9
RHH5241_R3613
15.8
RHH5270_R3642
22.3
Naive CD4 T-cell nTPM: 17.9
Samples: 4
Max nTPM: 29.2
Min nTPM: 6.5
RHH5306_R3672
7.6
RHH5214_R3585
6.5
RHH5242_R3614
29.2
RHH5271_R3643
28.3
Naive CD8 T-cell nTPM: 12.1
Samples: 4
Max nTPM: 18.6
Min nTPM: 3.3
RHH5201_R3572
3.3
RHH5229_R3601
18.6
RHH5258_R3630
12.3
RHH5287_R3659
14.2
Non-Vd2 gdTCR nTPM: 26.2
Samples: 4
Max nTPM: 37.0
Min nTPM: 7.9
RHH5235_R3607
37.0
RHH5264_R3636
36.0
RHH5207_R3578
7.9
RHH5299_R3665
23.8
T-reg nTPM: 18.0
Samples: 4
Max nTPM: 36.3
Min nTPM: 4.8
RHH5301_R3667
5.6
RHH5237_R3609
36.3
RHH5266_R3638
25.2
RHH5209_R3580
4.8
Terminal effector memory CD4 T-cell nTPM: 57.6
Samples: 2
Max nTPM: 60.7
Min nTPM: 54.5
RHH5243_R3615
54.5
RHH5272_R3644
60.7
Terminal effector memory CD8 T-cell nTPM: 29.7
Samples: 4
Max nTPM: 52.1
Min nTPM: 5.3
RHH5232_R3604
52.1
RHH5204_R3575
14.1
RHH5261_R3633
47.2
RHH5296_R3662
5.3
Vd2 gdTCR nTPM: 32.1
Samples: 4
Max nTPM: 61.1
Min nTPM: 0.7
RHH5234_R3606
61.1
RHH5206_R3577
0.7
RHH5263_R3635
57.2
RHH5298_R3664
9.4
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
