MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.1 nTPM
HPA Brain:9.7 nTPM
GTEx:27.1 nTPM
FANTOM5:14.1 Scaled Tags Per Million
Pig:29.6 nTPM
Mouse:29.6 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 9.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.9
2586 Male, age 75, left hemisphere 13.4
2411 Female, age 72, unknown 10.7
2019 Male, age 18, unknown 10.3
1870 Female, age 42, unknown 10.0
1827 Male, age 72, unknown 8.9
2666 Male, age 74, left hemisphere 8.2
2828 Female, age 72, unknown 8.1
1833 Male, age 53, unknown 7.4
1830 Male, age 51, unknown 6.9
2219 Male, age 76, both hemispheres 4.8
Dorsal raphe nucleus
nTPM: 9.6
2298 Female, age 72, unknown 12.6
1828 Male, age 53, unknown 10.0
2750 Male, age 76, both hemispheres 8.8
2016 Female, age 72, unknown 8.3
2047 Male, age 72, unknown 8.2
Inferior colliculus
nTPM: 6.9
2097 Female, age 72, unknown 9.7
1890 Male, age 53, unknown 7.4
1848 Female, age 42, unknown 5.8
2849 Male, age 72, unknown 4.7
Median raphe nucleus
nTPM: 8.5
2220 Male, age 76, midline 8.5
Periaquaductal grey, anterior
nTPM: 7.7
2502 Female, age 75, unknown 8.7
1795 Male, age 51, unknown 8.3
1947 Male, age 18, unknown 6.1
Periaquaductal grey, dorsal
nTPM: 6.7
1831 Male, age 72, unknown 8.3
1840 Male, age 53, unknown 6.2
2464 Female, age 72, unknown 6.2
2850 Male, age 76, both hemispheres 6.1
Periaquaductal grey, lateral
nTPM: 6.9
2272 Male, age 74, both hemispheres 7.6
2053 Male, age 18, unknown 7.1
2140 Male, age 76, both hemispheres 6.2
Pretectal area
nTPM: 8.7
1817 Female, age 42, unknown 12.0
1815 Male, age 53, unknown 11.0
1816 Male, age 51, unknown 10.3
2007 Male, age 72, unknown 10.0
2667 Female, age 75, unknown 9.8
2224 Female, age 72, unknown 8.7
1944 Female, age 72, unknown 8.4
2273 Male, age 74, both hemispheres 8.0
2316 Male, age 76, right hemisphere 7.1
2825 Male, age 18, unknown 6.7
2407 Male, age 75, both hemispheres 3.7
Red nucleus
nTPM: 9.6
1821 Female, age 72, unknown 12.6
2503 Female, age 72, unknown 11.9
2785 Male, age 18, unknown 10.5
1904 Male, age 53, unknown 10.0
2823 Male, age 76, right hemisphere 10.0
1954 Female, age 42, unknown 9.4
2769 Male, age 72, unknown 9.4
2588 Male, age 74, left hemisphere 9.0
2725 Female, age 75, unknown 8.7
2227 Male, age 72, unknown 8.5
1865 Male, age 51, unknown 8.0
2584 Male, age 75, left hemisphere 6.8
Substantia nigra
nTPM: 9.3
1916 Female, age 42, unknown 12.6
1851 Male, age 51, unknown 12.0
2699 Male, age 18, unknown 10.2
1889 Female, age 72, unknown 10.1
2583 Male, age 75, right hemisphere 9.2
2241 Male, age 72, unknown 9.1
2409 Female, age 72, unknown 8.9
2665 Male, age 74, both hemispheres 7.7
2590 Female, age 75, unknown 7.2
1941 Male, age 53, unknown 6.4
Superior colliculus
nTPM: 8.0
1796 Male, age 53, unknown 9.7
2087 Female, age 72, unknown 9.4
1995 Male, age 72, unknown 9.3
1913 Female, age 42, unknown 8.9
2668 Female, age 75, unknown 8.2
2261 Male, age 18, unknown 8.1
1839 Male, age 51, unknown 7.6
2664 Male, age 75, both hemispheres 6.8
1895 Male, age 76, right hemisphere 5.9
2587 Male, age 74, left hemisphere 5.9
Ventral tegmental area
nTPM: 9.7
2410 Female, age 72, unknown 12.0
1915 Female, age 42, unknown 11.0
2223 Female, age 72, unknown 10.3
1942 Male, age 51, unknown 8.4
2021 Male, age 53, unknown 8.4
2218 Male, age 76, both hemispheres 8.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 27.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.1
Samples: 139

Max nTPM: 62.1
Min nTPM: 14.9
Std nTPM: 7.5
Median nTPM: 26.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 62.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 61.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 48.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 46.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 43.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 39.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 38.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 38.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 37.9
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 37.6
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 36.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 14.1
FF:10158-103A5 76 years, female 14.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 29.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 27.0
Samples: 4

Max nTPM: 29.3
Min nTPM: 24.6
Sample A Female 28.5
Sample B Female 24.6
Sample C Male 29.3
Sample D Male 25.7
Midbrain
nTPM: 29.6
Samples: 4

Max nTPM: 31.5
Min nTPM: 28.2
Sample A Female 30.4
Sample B Female 28.2
Sample C Male 31.5
Sample D Male 28.2
Periaqueductal gray
nTPM: 25.3
Samples: 3

Max nTPM: 27.1
Min nTPM: 22.8
Sample B Female 27.1
Sample C Male 26.0
Sample D Male 22.8
Superior colliculi
nTPM: 28.9
Samples: 4

Max nTPM: 31.8
Min nTPM: 25.2
Sample A Female 29.3
Sample B Female 25.2
Sample C Male 31.8
Sample D Male 29.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 29.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.6
Samples: 4

Max nTPM: 33.3
Min nTPM: 26.8
Sample A Male 33.3
Sample B Male 26.8
Sample C Female 27.2
Sample D Female 31.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
556994 Antisense, RP_040825_02_H08, Mouse strain C57BL/6J (56 days, male) 0.4

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