MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:64.9 nTPM
HPA Brain:122.2 nTPM
GTEx:64.9 nTPM
FANTOM5:143.4 Scaled Tags Per Million
Pig:94.6 nTPM
Mouse:37.7 nTPM
Allen mouse:1.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 122.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 102.4
2019 Male, age 18, unknown 126.8
2411 Female, age 72, unknown 116.2
1830 Male, age 51, unknown 110.8
1833 Male, age 53, unknown 110.7
2586 Male, age 75, left hemisphere 107.1
1870 Female, age 42, unknown 98.0
2828 Female, age 72, unknown 96.7
2666 Male, age 74, left hemisphere 94.4
1827 Male, age 72, unknown 83.1
2219 Male, age 76, both hemispheres 79.7
Dorsal raphe nucleus
nTPM: 72.7
2750 Male, age 76, both hemispheres 108.7
1828 Male, age 53, unknown 73.3
2016 Female, age 72, unknown 70.0
2047 Male, age 72, unknown 56.1
2298 Female, age 72, unknown 55.4
Inferior colliculus
nTPM: 70.7
1890 Male, age 53, unknown 75.0
2849 Male, age 72, unknown 70.7
1848 Female, age 42, unknown 69.7
2097 Female, age 72, unknown 67.4
Median raphe nucleus
nTPM: 60.0
2220 Male, age 76, midline 60.0
Periaquaductal grey, anterior
nTPM: 70.2
2502 Female, age 75, unknown 79.6
1947 Male, age 18, unknown 66.0
1795 Male, age 51, unknown 65.0
Periaquaductal grey, dorsal
nTPM: 59.6
2464 Female, age 72, unknown 79.9
1831 Male, age 72, unknown 67.8
1840 Male, age 53, unknown 45.5
2850 Male, age 76, both hemispheres 45.0
Periaquaductal grey, lateral
nTPM: 63.2
2053 Male, age 18, unknown 72.4
2272 Male, age 74, both hemispheres 70.1
2140 Male, age 76, both hemispheres 47.2
Pretectal area
nTPM: 85.8
1815 Male, age 53, unknown 109.8
2007 Male, age 72, unknown 107.7
2407 Male, age 75, both hemispheres 96.9
1817 Female, age 42, unknown 96.1
1944 Female, age 72, unknown 89.4
2316 Male, age 76, right hemisphere 86.9
1816 Male, age 51, unknown 85.1
2667 Female, age 75, unknown 79.3
2825 Male, age 18, unknown 68.1
2273 Male, age 74, both hemispheres 66.4
2224 Female, age 72, unknown 58.4
Red nucleus
nTPM: 122.2
2823 Male, age 76, right hemisphere 149.9
1904 Male, age 53, unknown 143.1
2785 Male, age 18, unknown 138.4
1865 Male, age 51, unknown 135.5
2769 Male, age 72, unknown 123.6
2503 Female, age 72, unknown 121.3
2227 Male, age 72, unknown 119.1
2588 Male, age 74, left hemisphere 118.8
1821 Female, age 72, unknown 116.9
1954 Female, age 42, unknown 110.4
2584 Male, age 75, left hemisphere 101.9
2725 Female, age 75, unknown 87.1
Substantia nigra
nTPM: 81.5
2583 Male, age 75, right hemisphere 117.8
1851 Male, age 51, unknown 90.9
1889 Female, age 72, unknown 90.8
2409 Female, age 72, unknown 89.3
2590 Female, age 75, unknown 86.8
1941 Male, age 53, unknown 72.6
2699 Male, age 18, unknown 72.5
1916 Female, age 42, unknown 69.3
2241 Male, age 72, unknown 62.4
2665 Male, age 74, both hemispheres 62.1
Superior colliculus
nTPM: 95.9
1995 Male, age 72, unknown 122.7
1913 Female, age 42, unknown 121.2
2668 Female, age 75, unknown 113.0
1895 Male, age 76, right hemisphere 98.2
2587 Male, age 74, left hemisphere 89.6
2087 Female, age 72, unknown 88.6
2261 Male, age 18, unknown 81.9
1839 Male, age 51, unknown 81.5
2664 Male, age 75, both hemispheres 81.2
1796 Male, age 53, unknown 80.6
Ventral tegmental area
nTPM: 81.1
2410 Female, age 72, unknown 110.2
2223 Female, age 72, unknown 91.5
1915 Female, age 42, unknown 73.1
1942 Male, age 51, unknown 71.0
2218 Male, age 76, both hemispheres 70.6
2021 Male, age 53, unknown 70.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 64.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 64.9
Samples: 139

Max nTPM: 196.6
Min nTPM: 24.6
Std nTPM: 28.7
Median nTPM: 55.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 196.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 194.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 163.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 157.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 143.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 130.1
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 115.6
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 113.8
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 110.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 110.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 109.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 143.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 143.4
FF:10158-103A5 76 years, female 143.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 94.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 86.9
Samples: 4

Max nTPM: 116.4
Min nTPM: 62.3
Sample A Female 88.9
Sample B Female 62.3
Sample C Male 80.0
Sample D Male 116.4
Midbrain
nTPM: 94.6
Samples: 4

Max nTPM: 133.2
Min nTPM: 75.2
Sample A Female 133.2
Sample B Female 81.8
Sample C Male 88.3
Sample D Male 75.2
Periaqueductal gray
nTPM: 73.5
Samples: 3

Max nTPM: 78.4
Min nTPM: 70.0
Sample B Female 78.4
Sample C Male 72.0
Sample D Male 70.0
Superior colliculi
nTPM: 83.6
Samples: 4

Max nTPM: 97.2
Min nTPM: 54.2
Sample A Female 92.9
Sample B Female 54.2
Sample C Male 97.2
Sample D Male 89.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 37.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 37.7
Samples: 4

Max nTPM: 39.2
Min nTPM: 34.5
Sample A Male 38.5
Sample B Male 34.5
Sample C Female 38.6
Sample D Female 39.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
68632178 Antisense, RP_050125_01_G12, Mouse strain C57BL/6J (56 days, male) 1.7

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