MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:148.1 nTPM
HPA Brain:146.4 nTPM
GTEx:148.1 nTPM
FANTOM5:204.0 Scaled Tags Per Million
Pig:113.0 nTPM
Mouse:78.1 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 146.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 78.3
2411 Female, age 72, unknown 107.3
2586 Male, age 75, left hemisphere 94.4
1833 Male, age 53, unknown 91.2
2828 Female, age 72, unknown 80.5
1870 Female, age 42, unknown 78.5
1827 Male, age 72, unknown 76.3
1830 Male, age 51, unknown 74.6
2219 Male, age 76, both hemispheres 74.5
2019 Male, age 18, unknown 56.5
2666 Male, age 74, left hemisphere 49.5
Dorsal raphe nucleus
nTPM: 137.9
2298 Female, age 72, unknown 166.8
2016 Female, age 72, unknown 161.6
1828 Male, age 53, unknown 140.3
2047 Male, age 72, unknown 135.8
2750 Male, age 76, both hemispheres 84.9
Inferior colliculus
nTPM: 143.6
2097 Female, age 72, unknown 170.9
1890 Male, age 53, unknown 151.1
1848 Female, age 42, unknown 127.0
2849 Male, age 72, unknown 125.3
Median raphe nucleus
nTPM: 86.4
2220 Male, age 76, midline 86.4
Periaquaductal grey, anterior
nTPM: 97.2
2502 Female, age 75, unknown 125.1
1947 Male, age 18, unknown 84.6
1795 Male, age 51, unknown 81.9
Periaquaductal grey, dorsal
nTPM: 146.4
1840 Male, age 53, unknown 187.7
2850 Male, age 76, both hemispheres 152.7
2464 Female, age 72, unknown 139.3
1831 Male, age 72, unknown 106.0
Periaquaductal grey, lateral
nTPM: 112.6
2140 Male, age 76, both hemispheres 128.8
2053 Male, age 18, unknown 123.9
2272 Male, age 74, both hemispheres 85.2
Pretectal area
nTPM: 86.8
2273 Male, age 74, both hemispheres 127.6
2667 Female, age 75, unknown 106.0
2224 Female, age 72, unknown 99.9
2825 Male, age 18, unknown 97.8
2316 Male, age 76, right hemisphere 88.0
1944 Female, age 72, unknown 82.9
1816 Male, age 51, unknown 82.3
2407 Male, age 75, both hemispheres 81.2
1817 Female, age 42, unknown 74.9
1815 Male, age 53, unknown 63.3
2007 Male, age 72, unknown 51.1
Red nucleus
nTPM: 77.5
1821 Female, age 72, unknown 97.8
1954 Female, age 42, unknown 91.4
2503 Female, age 72, unknown 84.6
2823 Male, age 76, right hemisphere 84.4
2769 Male, age 72, unknown 84.1
2227 Male, age 72, unknown 83.1
1904 Male, age 53, unknown 75.7
2725 Female, age 75, unknown 75.5
1865 Male, age 51, unknown 75.2
2588 Male, age 74, left hemisphere 62.7
2584 Male, age 75, left hemisphere 61.2
2785 Male, age 18, unknown 54.0
Substantia nigra
nTPM: 107.3
2699 Male, age 18, unknown 167.2
2241 Male, age 72, unknown 153.4
1916 Female, age 42, unknown 121.5
1851 Male, age 51, unknown 105.4
2409 Female, age 72, unknown 101.0
2590 Female, age 75, unknown 92.2
1889 Female, age 72, unknown 91.3
1941 Male, age 53, unknown 83.9
2665 Male, age 74, both hemispheres 79.5
2583 Male, age 75, right hemisphere 77.2
Superior colliculus
nTPM: 94.9
1995 Male, age 72, unknown 132.1
2664 Male, age 75, both hemispheres 117.7
1913 Female, age 42, unknown 103.1
1839 Male, age 51, unknown 98.7
2587 Male, age 74, left hemisphere 97.1
2261 Male, age 18, unknown 95.8
1796 Male, age 53, unknown 87.9
2087 Female, age 72, unknown 85.6
1895 Male, age 76, right hemisphere 67.2
2668 Female, age 75, unknown 64.2
Ventral tegmental area
nTPM: 99.3
1942 Male, age 51, unknown 114.3
1915 Female, age 42, unknown 104.9
2021 Male, age 53, unknown 100.6
2410 Female, age 72, unknown 96.4
2218 Male, age 76, both hemispheres 94.5
2223 Female, age 72, unknown 85.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 148.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 148.1
Samples: 139

Max nTPM: 361.7
Min nTPM: 38.0
Std nTPM: 64.8
Median nTPM: 139.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 361.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 337.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 308.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 296.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 291.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 277.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 275.8
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 264.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 260.0
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 258.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 255.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 204.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 204.0
FF:10158-103A5 76 years, female 204.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 113.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 109.6
Samples: 4

Max nTPM: 135.5
Min nTPM: 94.4
Sample A Female 135.5
Sample B Female 104.6
Sample C Male 94.4
Sample D Male 103.8
Midbrain
nTPM: 113.0
Samples: 4

Max nTPM: 213.2
Min nTPM: 70.9
Sample A Female 213.2
Sample B Female 93.1
Sample C Male 74.7
Sample D Male 70.9
Periaqueductal gray
nTPM: 87.7
Samples: 3

Max nTPM: 91.0
Min nTPM: 81.3
Sample B Female 81.3
Sample C Male 90.7
Sample D Male 91.0
Superior colliculi
nTPM: 108.7
Samples: 4

Max nTPM: 131.2
Min nTPM: 100.0
Sample A Female 131.2
Sample B Female 103.2
Sample C Male 100.2
Sample D Male 100.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 78.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 78.1
Samples: 4

Max nTPM: 84.6
Min nTPM: 70.8
Sample A Male 80.6
Sample B Male 70.8
Sample C Female 76.4
Sample D Female 84.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
686199 Antisense, RP_040916_01_A07, Mouse strain C57BL/6J (56 days, male) 0.7

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