MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:46.7 nTPM
HPA Brain:19.9 nTPM
GTEx:46.7 nTPM
FANTOM5:103.9 Scaled Tags Per Million
Pig:29.7 nTPM
Mouse:69.3 nTPM
Allen mouse:2.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 19.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.3
1870 Female, age 42, unknown 21.2
2666 Male, age 74, left hemisphere 20.9
2219 Male, age 76, both hemispheres 17.2
1827 Male, age 72, unknown 16.1
2828 Female, age 72, unknown 16.0
1833 Male, age 53, unknown 15.4
1830 Male, age 51, unknown 14.5
2586 Male, age 75, left hemisphere 14.5
2019 Male, age 18, unknown 13.9
2411 Female, age 72, unknown 13.9
Dorsal raphe nucleus
nTPM: 17.5
2016 Female, age 72, unknown 20.2
1828 Male, age 53, unknown 19.8
2047 Male, age 72, unknown 17.3
2298 Female, age 72, unknown 15.9
2750 Male, age 76, both hemispheres 14.1
Inferior colliculus
nTPM: 17.5
1890 Male, age 53, unknown 18.9
2849 Male, age 72, unknown 18.3
1848 Female, age 42, unknown 17.2
2097 Female, age 72, unknown 15.8
Median raphe nucleus
nTPM: 17.8
2220 Male, age 76, midline 17.8
Periaquaductal grey, anterior
nTPM: 17.5
1947 Male, age 18, unknown 19.2
2502 Female, age 75, unknown 17.6
1795 Male, age 51, unknown 15.6
Periaquaductal grey, dorsal
nTPM: 19.2
2850 Male, age 76, both hemispheres 24.4
1840 Male, age 53, unknown 19.7
1831 Male, age 72, unknown 17.2
2464 Female, age 72, unknown 15.6
Periaquaductal grey, lateral
nTPM: 17.5
2140 Male, age 76, both hemispheres 20.0
2053 Male, age 18, unknown 18.8
2272 Male, age 74, both hemispheres 13.6
Pretectal area
nTPM: 16.5
2224 Female, age 72, unknown 18.4
1944 Female, age 72, unknown 18.1
2667 Female, age 75, unknown 17.7
1817 Female, age 42, unknown 16.7
2825 Male, age 18, unknown 16.7
1815 Male, age 53, unknown 16.6
1816 Male, age 51, unknown 16.4
2007 Male, age 72, unknown 16.1
2316 Male, age 76, right hemisphere 15.6
2273 Male, age 74, both hemispheres 15.4
2407 Male, age 75, both hemispheres 14.1
Red nucleus
nTPM: 18.1
1821 Female, age 72, unknown 21.2
1954 Female, age 42, unknown 20.7
2503 Female, age 72, unknown 20.5
1865 Male, age 51, unknown 20.4
2725 Female, age 75, unknown 20.3
1904 Male, age 53, unknown 18.9
2227 Male, age 72, unknown 17.8
2769 Male, age 72, unknown 16.9
2823 Male, age 76, right hemisphere 16.2
2785 Male, age 18, unknown 15.1
2588 Male, age 74, left hemisphere 15.0
2584 Male, age 75, left hemisphere 14.7
Substantia nigra
nTPM: 19.9
2409 Female, age 72, unknown 27.5
2699 Male, age 18, unknown 24.4
2241 Male, age 72, unknown 21.3
2665 Male, age 74, both hemispheres 20.3
1889 Female, age 72, unknown 19.8
1916 Female, age 42, unknown 19.6
1851 Male, age 51, unknown 19.5
2590 Female, age 75, unknown 16.7
1941 Male, age 53, unknown 16.4
2583 Male, age 75, right hemisphere 12.8
Superior colliculus
nTPM: 15.8
1913 Female, age 42, unknown 18.9
2587 Male, age 74, left hemisphere 17.9
1895 Male, age 76, right hemisphere 17.3
1995 Male, age 72, unknown 16.9
1839 Male, age 51, unknown 15.6
1796 Male, age 53, unknown 14.9
2668 Female, age 75, unknown 14.9
2087 Female, age 72, unknown 14.7
2261 Male, age 18, unknown 14.2
2664 Male, age 75, both hemispheres 12.8
Ventral tegmental area
nTPM: 16.8
1942 Male, age 51, unknown 18.7
1915 Female, age 42, unknown 17.9
2021 Male, age 53, unknown 16.2
2218 Male, age 76, both hemispheres 16.2
2223 Female, age 72, unknown 16.0
2410 Female, age 72, unknown 15.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 46.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.7
Samples: 139

Max nTPM: 82.1
Min nTPM: 23.9
Std nTPM: 10.2
Median nTPM: 45.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 82.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 72.8
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 72.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 72.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 71.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 67.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 66.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 65.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 64.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 63.9
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 62.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 103.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 103.9
FF:10158-103A5 76 years, female 103.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 29.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 29.7
Samples: 4

Max nTPM: 32.3
Min nTPM: 26.6
Sample A Female 32.3
Sample B Female 30.5
Sample C Male 29.3
Sample D Male 26.6
Midbrain
nTPM: 29.7
Samples: 4

Max nTPM: 34.5
Min nTPM: 26.6
Sample A Female 34.5
Sample B Female 30.2
Sample C Male 26.6
Sample D Male 27.3
Periaqueductal gray
nTPM: 26.1
Samples: 3

Max nTPM: 28.3
Min nTPM: 22.5
Sample B Female 22.5
Sample C Male 28.3
Sample D Male 27.6
Superior colliculi
nTPM: 26.9
Samples: 4

Max nTPM: 29.0
Min nTPM: 23.4
Sample A Female 29.0
Sample B Female 23.4
Sample C Male 26.5
Sample D Male 28.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 69.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 69.3
Samples: 4

Max nTPM: 71.8
Min nTPM: 67.0
Sample A Male 70.4
Sample B Male 67.8
Sample C Female 67.0
Sample D Female 71.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.7
69549608 Antisense, RP_050203_02_A07, Mouse strain C57BL/6J (56 days, male) 2.7

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