HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni
Consensus:30.4 nTPM
HPA Brain:29.0 nTPM
GTEx:30.4 nTPM
FANTOM5:66.9 Scaled Tags Per Million
Pig:14.8 nTPM
Mouse:14.1 nTPM
Allen mouse:0.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA026306Antibody HPA026309Antibody CAB016538
Glial cells Not detectedHighHigh
Neuronal cells Not detectedLowMedium







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 29.0
Sample id Sample description nTPM
Hippocampus
nTPM: 27.7
1898 Male, age 80, left hemisphere 34.7
2529 Female, age 94, left hemisphere 28.4
1911 Female, age 85, right hemisphere 27.9
1855 Male, age 76, left hemisphere 27.2
2621 Female, age 67, right hemisphere 24.9
2148 Female, age 91, left hemisphere 23.3
Dentate gyrus
nTPM: 27.1
2010 Male, age 76, both hemispheres 32.8
2246 Female, age 85, both hemispheres 28.9
1927 Female, age 91, both hemispheres 28.4
2528 Male, age 74, both hemispheres 27.1
2530 Female, age 94, left hemisphere 23.8
2531 Female, age 67, both hemispheres 21.9
Entorhinal gyrus
nTPM: 25.7
1938 Female, age 85, left hemisphere 31.6
2764 Male, age 80, right hemisphere 29.7
1787 Male, age 76, left hemisphere 27.2
2117 Female, age 91, right hemisphere 27.0
2613 Female, age 94, left hemisphere 20.9
2686 Male, age 75, right hemisphere 18.1
Hippocampus, CA1
nTPM: 28.9
2749 Male, age 80, left hemisphere 33.5
1873 Female, age 85, both hemispheres 31.5
2045 Male, age 76, both hemispheres 27.9
2527 Male, age 74, both hemispheres 26.9
2082 Female, age 91, right hemisphere 24.6
Hippocampus, CA2
nTPM: 27.7
1892 Male, age 76, both hemispheres 32.3
2249 Male, age 74, both hemispheres 31.6
1963 Male, age 80, left hemisphere 27.4
1940 Female, age 85, left hemisphere 27.1
2113 Female, age 91, right hemisphere 24.8
2437 Female, age 94, left hemisphere 22.7
Hippocampus, CA3
nTPM: 27.4
2137 Male, age 80, left hemisphere 30.6
1867 Male, age 76, both hemispheres 29.3
2620 Female, age 94, left hemisphere 28.5
2436 Male, age 74, both hemispheres 28.4
1891 Female, age 85, both hemispheres 27.8
2861 Female, age 67, both hemispheres 19.9
Parahippocampal cortex
nTPM: 25.2
1850 Male, age 80, both hemispheres 32.7
1933 Female, age 85, both hemispheres 30.7
1990 Female, age 91, right hemisphere 27.4
2018 Male, age 76, both hemispheres 26.9
2250 Female, age 67, right hemisphere 26.8
2245 Female, age 91, both hemispheres 25.6
2532 Female, age 72, left hemisphere 23.9
2693 Female, age 94, both hemispheres 21.1
2692 Male, age 74, both hemispheres 20.2
2622 Female, age 67, right hemisphere 17.0
Perirhinal gyrus
nTPM: 29.0
1847 Female, age 91, left hemisphere 34.5
1794 Male, age 80, right hemisphere 31.2
1841 Female, age 85, right hemisphere 30.3
2848 Male, age 76, right hemisphere 25.9
2521 Female, age 94, right hemisphere 23.0
Subiculum
nTPM: 27.1
2438 Female, age 94, left hemisphere 29.5
2042 Male, age 76, both hemispheres 29.0
1977 Female, age 85, both hemispheres 27.9
1901 Male, age 80, both hemispheres 26.9
2729 Female, age 91, right hemisphere 26.7
2619 Male, age 74, both hemispheres 22.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 30.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 30.4
Samples: 197

Max nTPM: 51.0
Min nTPM: 16.7
Std nTPM: 6.9
Median nTPM: 29.1
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 51.0
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 50.9
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 50.8
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 50.7
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 46.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 46.3
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 45.3
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 43.7
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 43.2
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 42.8
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 42.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 66.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 66.9
FF:10153-102I9 76 years, female 70.6
FF:10169-103B7 60 years, female 63.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 14.8
Pig sample Sample description nTPM
Subiculum
nTPM: 13.0
Samples: 4

Max nTPM: 14.8
Min nTPM: 11.0
Sample A Female 11.0
Sample B Female 13.6
Sample C Male 12.4
Sample D Male 14.8
Dorsal hippocampus
nTPM: 14.8
Samples: 4

Max nTPM: 15.7
Min nTPM: 13.4
Sample A Female 13.4
Sample B Female 15.7
Sample C Male 14.5
Sample D Male 15.5
Entorhinal cortex
nTPM: 12.9
Samples: 4

Max nTPM: 13.5
Min nTPM: 12.4
Sample A Female 12.4
Sample B Female 12.5
Sample C Male 13.5
Sample D Male 13.2
Ventral hippocampus
nTPM: 14.8
Samples: 4

Max nTPM: 15.6
Min nTPM: 13.4
Sample A Female 15.6
Sample B Female 15.0
Sample C Male 13.4
Sample D Male 15.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 14.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 14.1
Samples: 4

Max nTPM: 15.3
Min nTPM: 13.1
Sample A Male 15.3
Sample B Male 13.1
Sample C Female 14.6
Sample D Female 13.4
Hippocampal formation
nTPM: 13.5
Samples: 4

Max nTPM: 14.8
Min nTPM: 12.0
Sample A Male 13.3
Sample B Male 13.7
Sample C Female 12.0
Sample D Female 14.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.4
70812768 Antisense, RP_050712_02_E10, Mouse strain C57BL/6J (56 days, male) 0.6
68191360 Antisense, RP_041129_01_A07, Mouse strain C57BL/6J (56 days, male) 0.1

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