MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.2 nTPM
HPA Brain:32.4 nTPM
GTEx:22.2 nTPM
FANTOM5:16.2 Scaled Tags Per Million
Pig:21.9 nTPM
Mouse:37.5 nTPM
Allen mouse:2.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 32.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.1
1870 Female, age 42, unknown 33.4
1833 Male, age 53, unknown 32.6
1830 Male, age 51, unknown 31.3
2411 Female, age 72, unknown 30.8
2828 Female, age 72, unknown 30.1
2019 Male, age 18, unknown 29.6
1827 Male, age 72, unknown 26.4
2666 Male, age 74, left hemisphere 26.4
2586 Male, age 75, left hemisphere 26.1
2219 Male, age 76, both hemispheres 24.7
Dorsal raphe nucleus
nTPM: 26.9
2298 Female, age 72, unknown 28.2
2750 Male, age 76, both hemispheres 27.9
2016 Female, age 72, unknown 27.8
1828 Male, age 53, unknown 27.0
2047 Male, age 72, unknown 23.6
Inferior colliculus
nTPM: 28.6
2849 Male, age 72, unknown 30.0
1848 Female, age 42, unknown 29.7
2097 Female, age 72, unknown 28.4
1890 Male, age 53, unknown 26.1
Median raphe nucleus
nTPM: 28.2
2220 Male, age 76, midline 28.2
Periaquaductal grey, anterior
nTPM: 24.9
1947 Male, age 18, unknown 26.3
2502 Female, age 75, unknown 24.5
1795 Male, age 51, unknown 24.0
Periaquaductal grey, dorsal
nTPM: 28.6
2850 Male, age 76, both hemispheres 30.3
1840 Male, age 53, unknown 28.6
2464 Female, age 72, unknown 27.8
1831 Male, age 72, unknown 27.6
Periaquaductal grey, lateral
nTPM: 28.7
2272 Male, age 74, both hemispheres 30.2
2140 Male, age 76, both hemispheres 29.0
2053 Male, age 18, unknown 27.0
Pretectal area
nTPM: 28.9
1817 Female, age 42, unknown 32.2
2667 Female, age 75, unknown 32.1
2273 Male, age 74, both hemispheres 32.0
1815 Male, age 53, unknown 31.2
2316 Male, age 76, right hemisphere 29.7
2224 Female, age 72, unknown 28.8
2825 Male, age 18, unknown 28.0
2007 Male, age 72, unknown 26.8
2407 Male, age 75, both hemispheres 26.6
1816 Male, age 51, unknown 25.2
1944 Female, age 72, unknown 25.2
Red nucleus
nTPM: 32.4
1865 Male, age 51, unknown 36.9
1821 Female, age 72, unknown 35.6
1954 Female, age 42, unknown 35.4
2503 Female, age 72, unknown 34.2
2769 Male, age 72, unknown 33.7
1904 Male, age 53, unknown 33.2
2227 Male, age 72, unknown 33.1
2823 Male, age 76, right hemisphere 33.0
2725 Female, age 75, unknown 31.6
2785 Male, age 18, unknown 30.6
2588 Male, age 74, left hemisphere 27.2
2584 Male, age 75, left hemisphere 23.9
Substantia nigra
nTPM: 27.1
2409 Female, age 72, unknown 29.8
2699 Male, age 18, unknown 29.6
2241 Male, age 72, unknown 29.2
1889 Female, age 72, unknown 28.9
1851 Male, age 51, unknown 27.6
2590 Female, age 75, unknown 25.8
1916 Female, age 42, unknown 25.7
1941 Male, age 53, unknown 25.6
2583 Male, age 75, right hemisphere 25.3
2665 Male, age 74, both hemispheres 23.7
Superior colliculus
nTPM: 28.0
1913 Female, age 42, unknown 31.9
1995 Male, age 72, unknown 31.4
2587 Male, age 74, left hemisphere 30.8
1895 Male, age 76, right hemisphere 30.3
1839 Male, age 51, unknown 28.0
2261 Male, age 18, unknown 27.1
2668 Female, age 75, unknown 27.0
1796 Male, age 53, unknown 26.8
2087 Female, age 72, unknown 24.6
2664 Male, age 75, both hemispheres 21.8
Ventral tegmental area
nTPM: 27.6
2223 Female, age 72, unknown 30.1
2410 Female, age 72, unknown 29.6
2218 Male, age 76, both hemispheres 28.0
1915 Female, age 42, unknown 26.1
2021 Male, age 53, unknown 26.0
1942 Male, age 51, unknown 25.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 22.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.2
Samples: 139

Max nTPM: 37.7
Min nTPM: 14.7
Std nTPM: 4.3
Median nTPM: 21.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 37.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 34.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 33.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 33.3
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 31.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 30.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 30.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 29.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 29.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 29.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 28.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.2
FF:10158-103A5 76 years, female 16.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 21.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.9
Samples: 4

Max nTPM: 21.1
Min nTPM: 16.6
Sample A Female 21.1
Sample B Female 17.7
Sample C Male 16.6
Sample D Male 20.3
Midbrain
nTPM: 22.0
Samples: 4

Max nTPM: 32.1
Min nTPM: 16.9
Sample A Female 32.1
Sample B Female 19.9
Sample C Male 18.9
Sample D Male 16.9
Periaqueductal gray
nTPM: 17.1
Samples: 3

Max nTPM: 17.8
Min nTPM: 16.3
Sample B Female 17.8
Sample C Male 16.3
Sample D Male 17.3
Superior colliculi
nTPM: 20.4
Samples: 4

Max nTPM: 22.0
Min nTPM: 19.3
Sample A Female 22.0
Sample B Female 20.5
Sample C Male 19.8
Sample D Male 19.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 37.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 37.5
Samples: 4

Max nTPM: 38.8
Min nTPM: 36.0
Sample A Male 37.2
Sample B Male 38.0
Sample C Female 38.8
Sample D Female 36.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.3
68160833 Antisense, RP_041122_01_A03, Mouse strain C57BL/6J (56 days, male) 2.3

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