MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:768.8 nTPM
HPA Brain:238.6 nTPM
GTEx:768.8 nTPM
FANTOM5:883.0 Scaled Tags Per Million
Pig:303.8 nTPM
Mouse:811.3 nTPM
Allen mouse:7.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 238.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 203.8
1870 Female, age 42, unknown 239.0
2666 Male, age 74, left hemisphere 229.4
2586 Male, age 75, left hemisphere 221.2
2019 Male, age 18, unknown 206.7
2411 Female, age 72, unknown 203.3
1830 Male, age 51, unknown 200.1
2828 Female, age 72, unknown 200.1
1827 Male, age 72, unknown 194.9
1833 Male, age 53, unknown 187.9
2219 Male, age 76, both hemispheres 155.8
Dorsal raphe nucleus
nTPM: 211.1
2016 Female, age 72, unknown 242.8
2298 Female, age 72, unknown 225.0
2750 Male, age 76, both hemispheres 203.5
1828 Male, age 53, unknown 202.2
2047 Male, age 72, unknown 182.2
Inferior colliculus
nTPM: 214.0
2097 Female, age 72, unknown 227.8
1890 Male, age 53, unknown 219.7
2849 Male, age 72, unknown 216.6
1848 Female, age 42, unknown 191.8
Median raphe nucleus
nTPM: 193.6
2220 Male, age 76, midline 193.6
Periaquaductal grey, anterior
nTPM: 211.7
2502 Female, age 75, unknown 248.0
1795 Male, age 51, unknown 198.6
1947 Male, age 18, unknown 188.5
Periaquaductal grey, dorsal
nTPM: 193.6
1840 Male, age 53, unknown 215.8
2850 Male, age 76, both hemispheres 196.3
1831 Male, age 72, unknown 184.6
2464 Female, age 72, unknown 177.7
Periaquaductal grey, lateral
nTPM: 205.4
2053 Male, age 18, unknown 251.7
2140 Male, age 76, both hemispheres 200.7
2272 Male, age 74, both hemispheres 163.8
Pretectal area
nTPM: 192.9
2316 Male, age 76, right hemisphere 219.8
1815 Male, age 53, unknown 206.5
2825 Male, age 18, unknown 200.7
2224 Female, age 72, unknown 195.8
1817 Female, age 42, unknown 195.0
2007 Male, age 72, unknown 193.3
2407 Male, age 75, both hemispheres 191.2
1944 Female, age 72, unknown 189.3
1816 Male, age 51, unknown 182.8
2273 Male, age 74, both hemispheres 175.7
2667 Female, age 75, unknown 171.9
Red nucleus
nTPM: 221.9
2503 Female, age 72, unknown 266.3
1821 Female, age 72, unknown 247.8
1865 Male, age 51, unknown 241.9
2725 Female, age 75, unknown 227.5
1904 Male, age 53, unknown 224.6
2227 Male, age 72, unknown 223.5
2584 Male, age 75, left hemisphere 222.3
2769 Male, age 72, unknown 217.3
1954 Female, age 42, unknown 209.6
2588 Male, age 74, left hemisphere 204.8
2823 Male, age 76, right hemisphere 193.3
2785 Male, age 18, unknown 184.7
Substantia nigra
nTPM: 238.6
2699 Male, age 18, unknown 296.5
1851 Male, age 51, unknown 283.7
2665 Male, age 74, both hemispheres 278.6
2409 Female, age 72, unknown 251.8
2241 Male, age 72, unknown 249.0
1916 Female, age 42, unknown 241.4
2590 Female, age 75, unknown 209.4
1889 Female, age 72, unknown 206.6
1941 Male, age 53, unknown 192.1
2583 Male, age 75, right hemisphere 176.9
Superior colliculus
nTPM: 212.9
2587 Male, age 74, left hemisphere 253.9
1995 Male, age 72, unknown 247.0
1913 Female, age 42, unknown 228.4
2664 Male, age 75, both hemispheres 222.4
2668 Female, age 75, unknown 218.9
1796 Male, age 53, unknown 212.5
1839 Male, age 51, unknown 193.2
2087 Female, age 72, unknown 192.8
1895 Male, age 76, right hemisphere 190.9
2261 Male, age 18, unknown 169.0
Ventral tegmental area
nTPM: 221.8
1915 Female, age 42, unknown 268.3
2223 Female, age 72, unknown 240.1
2021 Male, age 53, unknown 239.1
1942 Male, age 51, unknown 205.6
2410 Female, age 72, unknown 200.1
2218 Male, age 76, both hemispheres 177.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 768.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 768.8
Samples: 139

Max nTPM: 2465.1
Min nTPM: 272.9
Std nTPM: 321.8
Median nTPM: 708.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 2465.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2021.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1804.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1692.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1582.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1377.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1314.9
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 1287.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1261.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1247.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1189.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 883.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 883.0
FF:10158-103A5 76 years, female 883.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 303.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 303.8
Samples: 4

Max nTPM: 395.4
Min nTPM: 228.7
Sample A Female 395.4
Sample B Female 328.6
Sample C Male 228.7
Sample D Male 262.4
Midbrain
nTPM: 274.1
Samples: 4

Max nTPM: 399.2
Min nTPM: 191.3
Sample A Female 399.2
Sample B Female 296.2
Sample C Male 209.5
Sample D Male 191.3
Periaqueductal gray
nTPM: 223.1
Samples: 3

Max nTPM: 229.1
Min nTPM: 219.1
Sample B Female 229.1
Sample C Male 221.1
Sample D Male 219.1
Superior colliculi
nTPM: 297.6
Samples: 4

Max nTPM: 364.3
Min nTPM: 247.1
Sample A Female 364.3
Sample B Female 305.4
Sample C Male 273.5
Sample D Male 247.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 811.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 811.3
Samples: 4

Max nTPM: 904.7
Min nTPM: 741.2
Sample A Male 904.7
Sample B Male 799.5
Sample C Female 741.2
Sample D Female 799.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.3
68637521 Antisense, RP_050126_01_A11, Mouse strain C57BL/6J (56 days, male) 7.3

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