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RPS25
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                                  • RPS25
                                  PATHOLOGY STOMACH CANCER Show tissue menu
                                  BREAST CANCER CARCINOID CERVICAL CANCER COLORECTAL CANCER ENDOMETRIAL CANCER GLIOMA HEAD AND NECK CANCER LIVER CANCER LUNG CANCER LYMPHOMA
                                  MELANOMA OVARIAN CANCER PANCREATIC CANCER PROSTATE CANCER RENAL CANCER SKIN CANCER STOMACH CANCER TESTIS CANCER THYROID CANCER UROTHELIAL CANCER
                                  ANTIBODIES
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                                  Dictionary
                                  Stomach cancer
                                  Human pathology
                                  Stomach cancer
                                  STOMACH CANCER - Interactive survival scatter ploti

                                  The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

                                  The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

                                  Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

                                  Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

                                  & Survival analysisi

                                  Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.

                                  RPS25 is not prognostic in stomach cancer


                                  Stage:


                                  0 1 2 3 4 5 6 7 8 910Time after diagnosis (years)0.0100200300400500600700Expression level (FPKM)Dead (n=146)Alive (n=208)2.4e+2Density dead2.4e+2Density alive1.2Density dead under cut off0.92Density dead over cut off0.20.40.60.8P score0.40.30.2Medain separation0.1P scoreDead median separationCut off
                                  0.00.10.20.30.40.50.60.70.80.91.0Survival probability 0 1 2 3 4 5 6 7 8 910Time (years)Low expression (n=151)High expression (n=203)
                                  Survival analysis
                                  Current cut offi

                                  Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.

                                  :
                                  Best expression cut offi

                                  Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .

                                  When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.

                                  : 224.59
                                  Median expressioni

                                  Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.

                                  : 240.84
                                  Median follow up timei

                                  Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.

                                  : 1.29
                                  P scorei

                                  Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.

                                  0.12
                                  5-year survival highi

                                  5-year survival for patients with higher expression than the expression cutoff.

                                  For melanoma and glioma, 3-year survival is shown.

                                  40%
                                  5-year survival lowi

                                  5-year survival for patients with lower expression than the expression cutoff.

                                  For melanoma and glioma, 3-year survival is shown.

                                  34%
                                  TCGA RNA samplesi

                                  RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .

                                  Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.

                                  Average FPKM 266.8
                                  Number of samples 354
                                  Samples
                                  Sample Description FPKM
                                  TCGA-BR-7717-01A 63 years, male, white, stage:iv, dead, 552 days 743.4
                                  TCGA-CD-8531-01A 66 years, female, asian, stage:iiia, alive, 383 days 695.3
                                  TCGA-BR-8361-01A 71 years, female, white, stage:iiic, alive, 946 days 644.4
                                  TCGA-CG-5722-01A 67 years, female, stage:iv, alive, 30 days 637.2
                                  TCGA-BR-6563-01A 60 years, male, white, stage:iib, alive, 679 days 622.8
                                  TCGA-BR-6566-01A 64 years, female, white, stage:iia, alive, 997 days 607.7
                                  TCGA-BR-6453-01A 54 years, male, white, stage:iia, alive, 485 days 579.7
                                  TCGA-CG-5723-01A 83 years, male, stage:ii, alive, 3196 days 572.7
                                  TCGA-B7-A5TJ-01A 74 years, male, white, stage:iib, alive, 335 days 555.5
                                  TCGA-BR-8676-01A 59 years, male, white, stage:iiib, alive, 229 days 552.0
                                  TCGA-CD-A48C-01A 80 years, female, asian, stage:iib, dead, 353 days 548.8
                                  TCGA-D7-6522-01A 58 years, male, white, stage:ib, alive, 566 days 540.6
                                  TCGA-BR-7715-01A 65 years, male, white, stage:iia, alive, 1023 days 539.1
                                  TCGA-BR-A44T-01A 53 years, female, white, stage:iia, alive, 1038 days 527.2
                                  TCGA-BR-8077-01A 58 years, female, white, stage:iiib, alive, 21 days 525.2
                                  TCGA-BR-A4QL-01A 75 years, female, white, stage:iiib, dead, 491 days 517.5
                                  TCGA-BR-A4J6-01A 69 years, female, white, stage:iia, alive, 20 days 516.5
                                  TCGA-BR-6707-01A 75 years, male, white, stage:iia, alive, 605 days 513.0
                                  TCGA-KB-A93H-01A 79 years, female, asian, stage:iib, alive, 1145 days 488.0
                                  TCGA-BR-6455-01A 59 years, male, white, stage:iib, dead, 422 days 486.2
                                  TCGA-HU-A4G2-01A 46 years, male, asian, stage:iib, alive, 739 days 485.0
                                  TCGA-HU-A4GJ-01A 60 years, female, asian, stage:iiic, alive, 650 days 483.8
                                  TCGA-IN-7806-01A 50 years, male, white, stage:iib, alive, 1106 days 473.7
                                  TCGA-D7-6528-01A 70 years, female, white, stage:ib, alive, 463 days 466.6
                                  TCGA-BR-8487-01A 64 years, female, white, stage:iia, alive, 34 days 465.9
                                  TCGA-BR-7723-01A 59 years, male, white, stage:iiib, dead, 874 days 464.7
                                  TCGA-RD-A7BT-01A 66 years, male, native hawaiian or other pacific islander, stage:iv, dead, 262 days 463.1
                                  TCGA-D7-A6EX-01A 72 years, female, white, stage:iiia, alive, 86 days 462.3
                                  TCGA-BR-4280-01A 78 years, female, white, stage:iii, dead, 201 days 445.2
                                  TCGA-CD-A487-01A 51 years, male, asian, stage:iib, alive, 374 days 440.0
                                  TCGA-CD-5803-01A 78 years, female, asian, stage:ii, dead, 341 days 435.0
                                  TCGA-CD-5798-01A 83 years, male, asian, stage:ii, alive, 408 days 434.7
                                  TCGA-CD-5813-01A 60 years, male, asian, stage:ii, dead, 377 days 431.9
                                  TCGA-HU-A4GQ-01A 71 years, male, asian, stage:iiic, dead, 3 days 430.9
                                  TCGA-CG-4437-01A 83 years, male, stage:ii, alive, 245 days 430.8
                                  TCGA-CG-5726-01A 73 years, male, stage:ia, dead, 881 days 428.7
                                  TCGA-HU-A4H4-01A 53 years, female, asian, stage:iib, alive, 725 days 426.5
                                  TCGA-BR-7704-01A 69 years, female, white, stage:ii, alive, 1072 days 424.9
                                  TCGA-CG-5721-01A 58 years, male, stage:iv, alive, 183 days 422.8
                                  TCGA-B7-5818-01A 62 years, male, white, stage:ib, alive, 356 days 417.3
                                  TCGA-BR-8059-01A 72 years, male, white, stage:iii, dead, 439 days 409.0
                                  TCGA-HU-A4GT-01A 71 years, female, asian, stage:iia, alive, 198 days 408.5
                                  TCGA-BR-8589-01A 56 years, male, white, stage:iiib, alive, 825 days 408.5
                                  TCGA-CD-5801-01A male, asian, stage:iiia, dead, 401 days 405.9
                                  TCGA-CG-4469-01A 70 years, male, stage:iv, dead, 215 days 403.7
                                  TCGA-CD-A4MH-01A 86 years, female, asian, stage:iia, alive, 371 days 398.2
                                  TCGA-D7-6525-01A 58 years, male, white, stage:iiia, dead, 406 days 397.2
                                  TCGA-VQ-A8DU-01A 63 years, male, white, stage:iiia, dead, 166 days 395.5
                                  TCGA-CG-5724-01A 59 years, male, stage:iv, dead, 366 days 395.4
                                  TCGA-CD-8525-01A 82 years, female, asian, stage:iiia, alive, 383 days 392.8
                                  TCGA-R5-A7ZF-01A 65 years, female, black or african american, stage:iv, dead, 259 days 392.6
                                  TCGA-CD-A4MG-01A 76 years, male, asian, stage:iia, dead, 200 days 391.7
                                  TCGA-BR-6564-01A 46 years, female, white, stage:iiia, dead, 794 days 391.5
                                  TCGA-R5-A7ZI-01A 44 years, female, white, stage:iv, alive, 2267 days 390.1
                                  TCGA-BR-7707-01A 69 years, female, white, stage:ib, alive, 1090 days 386.1
                                  TCGA-HU-A4GU-01A 74 years, male, asian, stage:iib, alive, 200 days 385.5
                                  TCGA-BR-8372-01A 63 years, male, white, stage:iiic, alive, 951 days 383.4
                                  TCGA-D7-6519-01A 64 years, female, white, alive, 625 days 382.5
                                  TCGA-BR-8690-01A 54 years, female, white, stage:iiib, alive, 325 days 380.5
                                  TCGA-BR-4279-01A 44 years, male, white, stage:ii, dead, 291 days 380.5
                                  TCGA-HU-A4GX-01A 70 years, female, asian, stage:iiic, alive, 616 days 377.2
                                  TCGA-CG-5734-01A 68 years, male, stage:iiia, dead, 243 days 375.5
                                  TCGA-CD-A489-01A 58 years, male, asian, stage:iia, dead, 344 days 374.6
                                  TCGA-BR-6801-01A 70 years, male, white, stage:iia, alive, 1223 days 373.0
                                  TCGA-BR-8371-01A 62 years, male, white, stage:iiib, dead, 359 days 372.8
                                  TCGA-D7-5577-01A 53 years, female, white, stage:iiia, dead, 782 days 372.2
                                  TCGA-CD-8527-01A 72 years, female, asian, stage:ii, dead, 218 days 372.1
                                  TCGA-CG-5732-01A 66 years, male, stage:iv, dead, 2100 days 371.8
                                  TCGA-D7-5578-01A 80 years, male, white, stage:iiia, alive, 385 days 371.7
                                  TCGA-VQ-A91D-01A 70 years, male, white, stage:iiic, dead, 356 days 369.4
                                  TCGA-IN-8462-01A 80 years, male, white, stage:iib, alive, 572 days 368.3
                                  TCGA-HU-A4HD-01A 73 years, male, asian, stage:iiia, alive, 1016 days 366.8
                                  TCGA-SW-A7EB-01A 45 years, male, white, stage:iiia, alive, 176 days 361.3
                                  TCGA-BR-A4J7-01A 49 years, male, asian, stage:iib, alive, 989 days 359.8
                                  TCGA-D7-6527-01A 62 years, male, white, stage:ii, dead, 312 days 358.7
                                  TCGA-D7-A4YX-01A 63 years, male, white, stage:iib, alive, 1108 days 357.6
                                  TCGA-CG-4438-01A 56 years, male, stage:iv, alive, 1645 days 357.6
                                  TCGA-D7-A74A-01A 61 years, female, white, stage:iiia, alive, 607 days 355.9
                                  TCGA-VQ-A91U-01A 78 years, male, asian, stage:iiia, dead, 52 days 347.3
                                  TCGA-RD-A7C1-01A 82 years, male, white, stage:ib, dead, 507 days 346.1
                                  TCGA-IN-7808-01A 59 years, male, white, dead, 105 days 345.8
                                  TCGA-BR-6705-01A 68 years, female, white, stage:iiib, dead, 779 days 337.4
                                  TCGA-F1-6875-01A 80 years, male, black or african american, stage:ia, dead, 2197 days 333.3
                                  TCGA-SW-A7EA-01A 61 years, female, white, stage:ib, alive, 579 days 330.5
                                  TCGA-D7-6526-01A 67 years, female, white, stage:iiia, alive, 523 days 329.6
                                  TCGA-IN-A6RR-01A 84 years, male, white, dead, 205 days 327.8
                                  TCGA-BR-8081-01A 71 years, female, white, stage:iib, alive, 981 days 325.0
                                  TCGA-BR-4257-01A 79 years, female, white, dead, 294 days 324.6
                                  TCGA-HF-A5NB-01A 75 years, female, stage:iiic, alive, 928 days 323.8
                                  TCGA-BR-8381-01A 51 years, male, white, stage:iib, alive, 224 days 323.4
                                  TCGA-VQ-A8DV-01A 48 years, male, white, stage:ib, dead, 403 days 323.3
                                  TCGA-B7-A5TI-01A 52 years, male, white, stage:iiic, alive, 595 days 322.7
                                  TCGA-BR-8080-01A 72 years, female, white, stage:iiic, dead, 292 days 319.5
                                  TCGA-CG-4444-01A 76 years, male, stage:iiia, alive, 1431 days 318.3
                                  TCGA-VQ-A8PE-01A 78 years, male, white, stage:iiib, dead, 675 days 317.2
                                  TCGA-BR-6803-01A 54 years, female, white, stage:iia, alive, 949 days 315.1
                                  TCGA-RD-A8MV-01A 56 years, male, white, stage:iiib, alive, 3720 days 314.7
                                  TCGA-IN-A7NR-01A 64 years, female, white, stage:iv, alive, 198 days 314.7
                                  TCGA-CD-8534-01A 41 years, male, asian, stage:ii, alive, 367 days 314.4
                                  TCGA-BR-6457-01A 69 years, male, white, stage:iia, alive, 416 days 312.0
                                  TCGA-CG-4436-01A 57 years, male, stage:ib, alive, 243 days 311.9
                                  TCGA-BR-8677-01A 74 years, female, white, stage:iiib, alive, 813 days 310.4
                                  TCGA-BR-6565-01A 67 years, male, white, stage:iib, dead, 279 days 309.3
                                  TCGA-HU-8249-01A 76 years, male, asian, stage:iiia, alive, 881 days 309.1
                                  TCGA-CG-5720-01A 71 years, male, stage:ib, dead, 30 days 308.3
                                  TCGA-RD-A8MW-01A 72 years, male, white, stage:iiib, dead, 1153 days 308.3
                                  TCGA-CG-4306-01A 90 years, male, stage:iv, dead, 31 days 308.0
                                  TCGA-VQ-A8PH-01A 62 years, male, white, stage:iiib, dead, 389 days 305.8
                                  TCGA-BR-4201-01A 66 years, female, white, dead, 940 days 304.9
                                  TCGA-F1-6177-01A 90 years, male, black or african american, stage:i, dead, 200 days 301.8
                                  TCGA-IN-A7NU-01A 69 years, male, white, stage:iiib, alive, 356 days 300.1
                                  TCGA-BR-A4J9-01A 55 years, male, white, stage:iia, alive, 14 days 297.3
                                  TCGA-VQ-A8PB-01A 65 years, female, white, stage:ii, dead, 1043 days 297.2
                                  TCGA-IN-A6RJ-01A 64 years, male, white, stage:ia, alive, 379 days 296.8
                                  TCGA-HU-A4HB-01A 68 years, male, asian, stage:iib, dead, 477 days 296.3
                                  TCGA-RD-A7BS-01A 46 years, male, white, stage:iiia, dead, 336 days 296.2
                                  TCGA-CG-4466-01A 81 years, female, stage:ib, alive, 577 days 295.2
                                  TCGA-FP-A4BF-01A 68 years, male, white, stage:iiia, dead, 168 days 294.9
                                  TCGA-HU-8604-01A 82 years, female, asian, stage:iia, alive, 694 days 294.4
                                  TCGA-ZQ-A9CR-01A 79 years, female, white, stage:iiic, dead, 24 days 293.0
                                  TCGA-CG-4465-01A 69 years, female, stage:iv, dead, 274 days 290.8
                                  TCGA-VQ-A8P2-01A 68 years, male, white, stage:iiia, alive, 1160 days 290.0
                                  TCGA-BR-8588-01A 55 years, female, white, stage:iib, alive, 389 days 288.2
                                  TCGA-BR-8483-01A 59 years, male, white, stage:iiia, alive, 164 days 288.2
                                  TCGA-VQ-A925-01A 66 years, male, white, stage:iiia, dead, 138 days 287.3
                                  TCGA-HU-A4H5-01A 71 years, male, asian, stage:ib, alive, 724 days 281.9
                                  TCGA-HU-A4G8-01A 71 years, female, asian, stage:iib, alive, 690 days 279.4
                                  TCGA-MX-A5UJ-01A 86 years, female, white, stage:iiia, alive, 600 days 279.2
                                  TCGA-BR-7196-01A 64 years, male, white, stage:iv, alive, 666 days 279.1
                                  TCGA-D7-8574-01A 72 years, male, white, stage:iiia, alive, 523 days 276.9
                                  TCGA-BR-8297-01A 58 years, male, white, stage:iiic, alive, 225 days 276.8
                                  TCGA-HU-A4GY-01A 77 years, female, asian, stage:iiia, alive, 8 days 276.7
                                  TCGA-BR-6852-01A 64 years, female, white, stage:iia, alive, 1367 days 276.3
                                  TCGA-RD-A8N0-01A 53 years, female, white, stage:iiib, alive, 1236 days 274.4
                                  TCGA-D7-A6EY-01A 72 years, female, white, stage:iiib, dead, 348 days 274.4
                                  TCGA-IN-A6RS-01A 76 years, male, white, stage:ia, alive, 383 days 274.0
                                  TCGA-VQ-A8E3-01A 79 years, male, white, stage:iia, dead, 661 days 274.0
                                  TCGA-CD-5799-01A 45 years, male, asian, stage:ii, alive, 396 days 273.1
                                  TCGA-BR-4187-01A 56 years, male, white, dead, 141 days 272.8
                                  TCGA-BR-8382-01A 67 years, female, white, stage:iiic, dead, 762 days 272.2
                                  TCGA-RD-A7BW-01A 68 years, female, white, stage:ib, dead, 156 days 271.6
                                  TCGA-BR-8366-01A 80 years, female, white, stage:iia, alive, 29 days 271.4
                                  TCGA-D7-6521-01A 65 years, male, white, alive, 564 days 271.4
                                  TCGA-BR-8295-01A 60 years, female, white, stage:iib, dead, 67 days 270.5
                                  TCGA-IN-A6RL-01A 84 years, male, white, dead, 406 days 267.6
                                  TCGA-BR-4253-01A 80 years, female, white, stage:iiia, dead, 124 days 267.3
                                  TCGA-HU-A4H2-01A 58 years, female, asian, stage:iiib, alive, 394 days 267.0
                                  TCGA-VQ-A8P3-01A 72 years, male, white, stage:iiia, alive, 1132 days 266.3
                                  TCGA-HU-8602-01A 58 years, female, asian, stage:iib, alive, 679 days 264.6
                                  TCGA-VQ-A8PQ-01A 50 years, female, white, stage:iv, dead, 476 days 263.8
                                  TCGA-CG-4440-01A 68 years, female, stage:iv, dead, 122 days 263.4
                                  TCGA-HU-A4G9-01A 67 years, female, asian, stage:ia, alive, 736 days 263.0
                                  TCGA-BR-8286-01A 49 years, male, white, stage:ii, alive, 895 days 262.6
                                  TCGA-BR-4256-01A 80 years, male, white, dead, 284 days 261.2
                                  TCGA-D7-A6EV-01A 71 years, female, white, stage:iib, alive, 342 days 261.1
                                  TCGA-CD-8528-01A 43 years, female, asian, stage:iiia, alive, 375 days 259.7
                                  TCGA-HU-A4H3-01A 56 years, female, asian, stage:iiic, alive, 882 days 259.6
                                  TCGA-D7-A6F0-01A 79 years, female, white, stage:ib, alive, 678 days 258.2
                                  TCGA-HU-A4H6-01A 72 years, female, asian, stage:iiia, alive, 644 days 257.9
                                  TCGA-FP-8210-01A 48 years, male, asian, stage:iiia, dead, 153 days 255.5
                                  TCGA-CG-5719-01A 54 years, female, stage:iv, alive, 31 days 255.5
                                  TCGA-BR-8680-01A 45 years, male, asian, stage:iv, alive, 972 days 255.0
                                  TCGA-VQ-A8DT-01A 43 years, male, stage:iiib, alive, 1484 days 254.1
                                  TCGA-F1-A72C-01A 68 years, male, asian, stage:iia, alive, 346 days 252.0
                                  TCGA-BR-A4J8-01A 71 years, female, white, stage:iiib, alive, 411 days 250.2
                                  TCGA-MX-A663-01A 66 years, male, white, stage:iia, dead, 300 days 249.5
                                  TCGA-VQ-A91X-01A 74 years, male, white, stage:iiib, dead, 289 days 248.9
                                  TCGA-D7-A4YU-01A 73 years, male, white, stage:iiib, alive, 500 days 247.9
                                  TCGA-BR-A44U-01A 70 years, male, white, stage:iiib, dead, 422 days 246.2
                                  TCGA-BR-6458-01A 57 years, female, white, stage:iib, dead, 588 days 245.7
                                  TCGA-BR-8284-01A 72 years, female, white, stage:iiic, dead, 245 days 245.7
                                  TCGA-HU-8238-01A 56 years, male, asian, alive, 46 days 245.6
                                  TCGA-VQ-A8PO-01A 74 years, male, white, stage:iib, dead, 282 days 244.8
                                  TCGA-CG-4477-01A 58 years, female, stage:ib, alive, 942 days 243.6
                                  TCGA-BR-8686-01A 69 years, male, asian, stage:iiib, dead, 635 days 243.0
                                  TCGA-BR-8592-01A 63 years, female, white, stage:iiib, dead, 191 days 241.7
                                  TCGA-CD-8530-01A 52 years, male, asian, stage:ii, alive, 377 days 241.0
                                  TCGA-BR-6709-01A 57 years, female, white, stage:iiib, dead, 370 days 240.7
                                  TCGA-VQ-A8DZ-01A 70 years, male, black or african american, stage:iv, dead, 396 days 240.4
                                  TCGA-B7-A5TN-01A 60 years, male, white, stage:iib, alive, 287 days 239.2
                                  TCGA-CD-8535-01A 59 years, male, asian, stage:iiia, alive, 390 days 238.5
                                  TCGA-HU-A4G3-01A 54 years, male, asian, stage:iib, alive, 170 days 238.4
                                  TCGA-KB-A6F7-01A 54 years, female, stage:ib, alive, 1935 days 237.4
                                  TCGA-CD-5800-01A female, asian, stage:ii, alive, 400 days 237.3
                                  TCGA-B7-A5TK-01A 51 years, male, white, stage:iiia, alive, 288 days 235.2
                                  TCGA-HU-A4GP-01A 62 years, female, asian, stage:iia, alive, 273 days 233.9
                                  TCGA-BR-7716-01A 62 years, female, white, stage:iib, alive, 1210 days 233.9
                                  TCGA-BR-7722-01A 62 years, male, white, stage:iib, dead, 466 days 233.9
                                  TCGA-HU-A4GC-01A 74 years, male, asian, stage:iiib, alive, 99 days 233.7
                                  TCGA-D7-6524-01A 53 years, male, white, stage:ii, alive, 543 days 232.7
                                  TCGA-CG-4441-01A 83 years, male, stage:iiia, dead, 426 days 232.6
                                  TCGA-VQ-A8E2-01A 57 years, male, asian, stage:iiib, alive, 1319 days 232.4
                                  TCGA-CD-A486-01A 68 years, male, asian, stage:iia, dead, 192 days 232.2
                                  TCGA-BR-8289-01A 57 years, male, white, stage:iv, dead, 81 days 232.1
                                  TCGA-BR-8590-01A 62 years, male, white, stage:iiic, dead, 284 days 231.8
                                  TCGA-BR-A4IV-01A 47 years, male, asian, stage:iiib, dead, 869 days 231.2
                                  TCGA-D7-A748-01A 41 years, female, white, stage:iv, dead, 132 days 231.1
                                  TCGA-HJ-7597-01A 71 years, female, white, stage:ib, dead, 805 days 229.2
                                  TCGA-CG-5717-01A 58 years, male, stage:ii, dead, 212 days 228.3
                                  TCGA-BR-8591-01A 79 years, male, white, stage:iiic, alive, 856 days 228.2
                                  TCGA-VQ-A91N-01A 59 years, female, stage:iv, dead, 570 days 227.0
                                  TCGA-RD-A8N6-01A 78 years, female, white, stage:iiia, dead, 272 days 226.8
                                  TCGA-IN-8663-01A 68 years, male, white, stage:iib, dead, 103 days 224.7
                                  TCGA-HU-A4GF-01A 69 years, male, asian, stage:iia, alive, 785 days 224.5
                                  TCGA-BR-8368-01A 84 years, female, white, stage:ib, alive, 131 days 223.7
                                  TCGA-BR-8291-01A 61 years, male, white, stage:iib, dead, 607 days 223.3
                                  TCGA-BR-6802-01A 65 years, male, white, stage:iiia, alive, 940 days 223.1
                                  TCGA-BR-8485-01A 68 years, female, white, stage:iiic, alive, 280 days 223.1
                                  TCGA-R5-A7ZR-01A 70 years, female, black or african american, stage:iii, dead, 185 days 222.9
                                  TCGA-D7-8572-01A 57 years, male, white, stage:iib, alive, 511 days 222.6
                                  TCGA-BR-A4J5-01A 56 years, male, asian, stage:iiia, alive, 862 days 222.2
                                  TCGA-CG-4305-01A 69 years, male, stage:ii, alive, 485 days 221.8
                                  TCGA-IN-A6RI-01A 45 years, male, white, stage:i, alive, 559 days 220.2
                                  TCGA-D7-8573-01A 57 years, male, white, stage:iia, alive, 593 days 219.3
                                  TCGA-IN-A6RN-01A 72 years, female, white, stage:iia, alive, 594 days 218.2
                                  TCGA-HU-8244-01A 77 years, female, asian, stage:ia, alive, 742 days 216.3
                                  TCGA-VQ-A94U-01A 71 years, male, white, stage:iib, alive, 819 days 215.4
                                  TCGA-CG-4475-01A 76 years, male, stage:iib, alive, 699 days 214.0
                                  TCGA-MX-A666-01A 61 years, male, white, stage:iia, alive, 427 days 211.1
                                  TCGA-CD-5804-01A 90 years, male, asian, alive, 368 days 210.4
                                  TCGA-BR-8380-01A 55 years, male, white, stage:iiic, dead, 21 days 209.9
                                  TCGA-CD-A48A-01A 57 years, male, asian, stage:iia, alive, 378 days 209.6
                                  TCGA-BR-7958-01A 60 years, male, white, stage:iiib, alive, 899 days 209.2
                                  TCGA-BR-A4CS-01A 77 years, male, white, stage:iiic, dead, 45 days 209.0
                                  TCGA-FP-7829-01A 69 years, male, white, stage:iib, alive, 594 days 208.1
                                  TCGA-BR-8365-01A 70 years, female, white, stage:iia, dead, 533 days 207.4
                                  TCGA-BR-6452-01A 78 years, female, white, stage:iia, alive, 1055 days 207.3
                                  TCGA-BR-8364-01A 42 years, female, white, stage:iiic, alive, 675 days 206.4
                                  TCGA-VQ-A924-01A 69 years, male, stage:ii, dead, 1686 days 205.5
                                  TCGA-FP-A9TM-01A 77 years, male, white, alive, 189 days 203.5
                                  TCGA-F1-6874-01A 79 years, male, white, stage:ib, alive, 440 days 202.9
                                  TCGA-HU-A4H0-01A 72 years, male, asian, stage:iiic, alive, 64 days 201.7
                                  TCGA-VQ-AA68-01A 52 years, female, white, stage:iiic, alive, 1328 days 200.7
                                  TCGA-D7-A747-01A 57 years, male, white, stage:iib, dead, 255 days 200.5
                                  TCGA-BR-8484-01A 61 years, male, white, stage:iiia, dead, 766 days 200.3
                                  TCGA-MX-A5UG-01A 78 years, male, asian, stage:iiia, dead, 113 days 200.1
                                  TCGA-BR-6456-01A 74 years, female, white, stage:iib, dead, 526 days 199.4
                                  TCGA-HU-A4H8-01A 77 years, male, asian, stage:ib, alive, 428 days 199.0
                                  TCGA-IN-AB1V-01A 63 years, male, white, stage:ia, alive, 479 days 198.6
                                  TCGA-BR-8296-01A 58 years, female, white, stage:iiic, dead, 474 days 198.2
                                  TCGA-BR-7957-01A 50 years, female, white, stage:iv, dead, 276 days 197.8
                                  TCGA-VQ-A8PX-01A 51 years, male, stage:ia, alive, 1964 days 197.0
                                  TCGA-VQ-A8E7-01B 59 years, male, white, stage:iv, alive, 1138 days 197.0
                                  TCGA-D7-6818-01A 53 years, male, white, stage:iiia, dead, 376 days 196.9
                                  TCGA-CD-8526-01A 73 years, female, asian, stage:iiia, alive, 381 days 196.4
                                  TCGA-HF-7134-01A male, stage:ia, alive, 1588 days 195.5
                                  TCGA-HF-7132-01A male, stage:ii, alive, 2351 days 194.6
                                  TCGA-CD-8524-01A 61 years, female, asian, stage:ii, alive, 388 days 194.1
                                  TCGA-F1-A448-01A 70 years, male, white, stage:iiib, alive, 647 days 193.0
                                  TCGA-BR-8682-01A 52 years, male, asian, stage:iib, alive, 991 days 192.0
                                  TCGA-BR-7959-01A 59 years, male, white, stage:iiia, alive, 1010 days 191.4
                                  TCGA-VQ-A8P8-01A 72 years, female, black or african american, stage:iib, alive, 942 days 190.7
                                  TCGA-EQ-8122-01A 72 years, female, white, stage:iib, dead, 243 days 190.6
                                  TCGA-VQ-A8PU-01A 72 years, female, white, stage:iiia, dead, 832 days 189.7
                                  TCGA-BR-7901-01A 74 years, male, white, stage:iib, dead, 105 days 189.0
                                  TCGA-D7-A6F2-01A 62 years, male, white, stage:ib, alive, 476 days 188.1
                                  TCGA-IN-AB1X-01A 78 years, female, white, stage:iia, alive, 411 days 186.4
                                  TCGA-D7-6815-01A 70 years, female, white, stage:iib, alive, 486 days 186.3
                                  TCGA-R5-A7O7-01A 52 years, male, white, stage:iv, alive, 1389 days 185.2
                                  TCGA-VQ-AA6D-01A 52 years, female, stage:iiia, alive, 521 days 184.0
                                  TCGA-D7-8576-01A 54 years, female, white, stage:iiib, dead, 446 days 183.9
                                  TCGA-VQ-AA6J-01A 75 years, male, black or african american, stage:iiib, alive, 838 days 183.6
                                  TCGA-FP-7735-01A 77 years, male, black or african american, stage:ib, dead, 106 days 183.3
                                  TCGA-BR-8369-01A 76 years, female, white, stage:iiib, alive, 427 days 183.1
                                  TCGA-VQ-A94P-01A 57 years, male, white, dead, 81 days 182.6
                                  TCGA-ZA-A8F6-01A 71 years, male, white, stage:ib, alive, 525 days 181.4
                                  TCGA-VQ-A91Z-01A 67 years, female, white, stage:iiia, alive, 1690 days 180.3
                                  TCGA-BR-8384-01A 69 years, male, white, stage:iiic, alive, 113 days 179.4
                                  TCGA-D7-A4Z0-01A 60 years, female, white, stage:iib, alive, 449 days 179.4
                                  TCGA-BR-8678-01A 76 years, male, white, stage:ib, alive, 754 days 177.4
                                  TCGA-RD-A8N1-01A 70 years, male, white, stage:iiib, alive, 3519 days 175.7
                                  TCGA-D7-8570-01A 44 years, male, white, stage:iiib, alive, 752 days 174.8
                                  TCGA-CG-5725-01A 72 years, male, stage:ib, dead, 457 days 173.7
                                  TCGA-FP-8209-01A 49 years, male, white, stage:ib, dead, 1811 days 172.7
                                  TCGA-BR-A4J4-01A 39 years, male, asian, stage:iiib, alive, 16 days 172.6
                                  TCGA-BR-8687-01A 67 years, female, white, stage:iiic, dead, 250 days 172.3
                                  TCGA-HU-8608-01A 70 years, male, asian, stage:iiib, alive, 641 days 170.9
                                  TCGA-BR-6710-01A 41 years, male, white, stage:ib, alive, 273 days 169.9
                                  TCGA-IN-A7NT-01A 73 years, female, white, stage:iib, alive, 323 days 169.9
                                  TCGA-CD-8533-01A 48 years, male, asian, stage:ii, alive, 468 days 169.7
                                  TCGA-RD-A8N2-01A 59 years, female, white, stage:ib, alive, 3540 days 168.7
                                  TCGA-BR-A4PF-01A 72 years, male, white, stage:iiib, alive, 35 days 168.5
                                  TCGA-VQ-A94R-01A 63 years, male, white, dead, 1294 days 168.1
                                  TCGA-RD-A8N5-01A 78 years, male, white, stage:iiia, dead, 1747 days 167.5
                                  TCGA-VQ-A94T-01A 73 years, male, stage:iiib, dead, 342 days 166.4
                                  TCGA-CG-4460-01A 66 years, female, stage:iv, dead, 669 days 165.6
                                  TCGA-VQ-A91E-01A 67 years, female, white, stage:iiib, alive, 664 days 164.7
                                  TCGA-HF-7133-01A female, stage:iv, alive, 1918 days 164.1
                                  TCGA-VQ-A928-01A 49 years, male, white, stage:iv, dead, 174 days 163.8
                                  TCGA-VQ-A94O-01A 74 years, male, black or african american, stage:iiic, dead, 640 days 163.2
                                  TCGA-BR-7851-01A 74 years, male, white, stage:iib, dead, 574 days 162.7
                                  TCGA-RD-A8N9-01A 63 years, female, asian, stage:ii, alive, 1083 days 162.4
                                  TCGA-VQ-A91Y-01A 67 years, male, white, stage:iiic, dead, 296 days 162.4
                                  TCGA-VQ-A91S-01A 63 years, male, black or african american, stage:iiib, alive, 1000 days 160.7
                                  TCGA-VQ-A8E0-01A 68 years, male, black or african american, stage:iiia, dead, 562 days 159.7
                                  TCGA-HU-A4GD-01A 56 years, male, asian, stage:iib, alive, 692 days 159.4
                                  TCGA-RD-A8NB-01A 80 years, female, white, stage:iiia, dead, 513 days 159.2
                                  TCGA-RD-A8N4-01A 58 years, female, white, stage:iiia, alive, 2171 days 158.1
                                  TCGA-CD-8529-01A 65 years, male, asian, stage:iv, alive, 374 days 157.6
                                  TCGA-BR-8367-01A 56 years, male, white, stage:iiib, dead, 801 days 157.6
                                  TCGA-VQ-AA6F-01A 58 years, male, white, stage:iib, alive, 1646 days 156.8
                                  TCGA-BR-8058-01A 53 years, female, white, stage:iiib, alive, 1133 days 155.3
                                  TCGA-BR-4191-01A 72 years, male, white, dead, 558 days 154.9
                                  TCGA-BR-7197-01A 69 years, male, white, stage:ii, alive, 280 days 153.4
                                  TCGA-3M-AB46-01A male, white, stage:ib, alive, 1765 days 153.0
                                  TCGA-D7-6520-01A 53 years, male, white, stage:iiia, alive, 573 days 152.7
                                  TCGA-D7-6822-01A 77 years, male, white, stage:ib, alive, 375 days 151.0
                                  TCGA-VQ-AA64-01A 68 years, male, white, stage:iiib, dead, 560 days 150.5
                                  TCGA-FP-7916-01A 78 years, male, asian, stage:iiic, dead, 428 days 150.2
                                  TCGA-R5-A7ZE-01B 66 years, female, white, stage:iiia, dead, 554 days 150.0
                                  TCGA-VQ-A8PC-01A 65 years, male, white, stage:iiia, dead, 1407 days 148.0
                                  TCGA-CG-4301-01A 75 years, female, stage:iv, alive, 92 days 146.0
                                  TCGA-CG-4443-01A 68 years, male, stage:ia, alive, 912 days 145.0
                                  TCGA-VQ-A8PJ-01A 53 years, male, stage:iv, dead, 82 days 143.7
                                  TCGA-FP-A8CX-01A 60 years, male, white, stage:iiic, alive, 7 days 143.0
                                  TCGA-D7-8575-01A 75 years, male, white, stage:iiia, dead, 554 days 143.0
                                  TCGA-BR-8683-01A 75 years, male, asian, stage:iiib, dead, 300 days 141.3
                                  TCGA-CD-8532-01A 52 years, male, asian, stage:ii, dead, 354 days 140.8
                                  TCGA-VQ-A8PF-01A 77 years, male, stage:iiib, dead, 76 days 140.5
                                  TCGA-VQ-A8PD-01A 69 years, male, white, stage:iiic, dead, 496 days 140.5
                                  TCGA-VQ-A8PM-01A 56 years, male, white, stage:iv, dead, 57 days 139.2
                                  TCGA-VQ-A923-01A 90 years, male, white, stage:iiia, dead, 61 days 135.3
                                  TCGA-BR-8486-01A 90 years, female, white, stage:ia, alive, 615 days 134.1
                                  TCGA-D7-8579-01A 66 years, female, white, stage:iib, alive, 636 days 133.8
                                  TCGA-VQ-AA6A-01A 56 years, male, white, stage:iiic, alive, 1184 days 133.7
                                  TCGA-VQ-A8PP-01A 76 years, male, stage:iv, dead, 712 days 133.3
                                  TCGA-BR-4267-01A 51 years, male, white, stage:ib, dead, 188 days 131.6
                                  TCGA-VQ-A91K-01A 69 years, male, white, stage:iiia, alive, 1862 days 130.2
                                  TCGA-FP-8211-01A 62 years, male, white, stage:iib, alive, 413 days 129.1
                                  TCGA-VQ-A91V-01A 58 years, male, stage:iiia, alive, 1297 days 128.3
                                  TCGA-FP-8099-01A 79 years, male, white, stage:iia, alive, 519 days 126.7
                                  TCGA-CG-5718-01A 78 years, female, stage:ii, dead, 1095 days 125.9
                                  TCGA-KB-A93J-01A 78 years, male, white, stage:ii, alive, 1124 days 124.5
                                  TCGA-VQ-A927-01A 81 years, male, white, stage:iiib, dead, 200 days 124.4
                                  TCGA-VQ-A92D-01A 67 years, male, white, stage:ib, alive, 2032 days 121.3
                                  TCGA-VQ-A8P5-01A 67 years, male, white, stage:iia, dead, 235 days 121.0
                                  TCGA-VQ-AA69-01A 35 years, male, white, stage:iiia, alive, 864 days 119.9
                                  TCGA-FP-7998-01A 77 years, male, white, stage:iiic, alive, 678 days 115.3
                                  TCGA-FP-8631-01A 68 years, male, white, stage:iiia, alive, 17 days 112.9
                                  TCGA-VQ-A91Q-01A 61 years, male, stage:iv, dead, 633 days 110.4
                                  TCGA-VQ-AA6K-01A 60 years, male, white, stage:iiic, dead, 378 days 110.0
                                  TCGA-HU-8610-01A 75 years, male, asian, stage:ia, alive, 23 days 107.4
                                  TCGA-BR-8373-01A 65 years, female, white, stage:iiia, alive, 450 days 106.0
                                  TCGA-VQ-A91A-01A 67 years, male, white, stage:iiib, alive, 1200 days 104.5
                                  TCGA-D7-A6EZ-01A 66 years, male, white, stage:iiia, dead, 618 days 101.0
                                  TCGA-D7-8578-01A 72 years, male, white, stage:ib, alive, 643 days 100.5
                                  TCGA-R5-A805-01A 71 years, male, white, stage:iiib, dead, 281 days 99.6
                                  TCGA-HU-A4GH-01A 75 years, male, asian, stage:ia, alive, 358 days 98.8
                                  TCGA-VQ-AA6G-01A 68 years, male, white, stage:iia, dead, 792 days 91.7
                                  TCGA-VQ-A922-01A 70 years, male, stage:iv, dead, 275 days 90.4
                                  TCGA-BR-8060-01A 75 years, female, white, stage:iib, dead, 348 days 90.1
                                  TCGA-KB-A93G-01A 68 years, male, white, stage:ib, alive, 613 days 86.9
                                  TCGA-VQ-A8PK-01A 58 years, male, white, stage:iiib, dead, 543 days 73.7
                                  TCGA-IP-7968-01A 74 years, male, white, stage:iiib, alive, 77 days 65.1
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                                  181.7240.8323.765.1527.20100200300400500600700
                                  181.7240.8323.765.1527.20100200300400500600700
                                  STOMACH CANCER - Protein expressioni

                                  A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.

                                  Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.

                                   

                                  Antibody stainingi

                                  Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

                                  Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.


                                  Antibody HPA031801
                                   Staining
                                    High
                                    Medium
                                    Low
                                    Not detected
                                   Intensity
                                    Strong
                                    Moderate
                                    Weak
                                    Negative
                                   Quantity
                                    >75%
                                    75%-25%
                                    <25%
                                    None
                                   Location
                                    Nuclear
                                    Cytoplasmic/membranous
                                    Cytoplasmic/membranous,nuclear
                                    None
                                  Click images for details

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