MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.0 nTPM
HPA Brain:20.1 nTPM
GTEx:13.0 nTPM
FANTOM5:17.6 Scaled Tags Per Million
Pig:6.8 nTPM
Mouse:7.1 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 20.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.4
2019 Male, age 18, unknown 20.5
1833 Male, age 53, unknown 20.4
1830 Male, age 51, unknown 20.3
1870 Female, age 42, unknown 19.6
2411 Female, age 72, unknown 18.8
2828 Female, age 72, unknown 18.8
2219 Male, age 76, both hemispheres 17.2
2666 Male, age 74, left hemisphere 16.8
1827 Male, age 72, unknown 16.2
2586 Male, age 75, left hemisphere 15.8
Dorsal raphe nucleus
nTPM: 19.0
2016 Female, age 72, unknown 20.6
1828 Male, age 53, unknown 20.1
2750 Male, age 76, both hemispheres 19.1
2047 Male, age 72, unknown 18.6
2298 Female, age 72, unknown 16.8
Inferior colliculus
nTPM: 19.0
2849 Male, age 72, unknown 20.1
1848 Female, age 42, unknown 19.3
1890 Male, age 53, unknown 19.2
2097 Female, age 72, unknown 17.3
Median raphe nucleus
nTPM: 16.4
2220 Male, age 76, midline 16.4
Periaquaductal grey, anterior
nTPM: 18.1
2502 Female, age 75, unknown 19.3
1947 Male, age 18, unknown 18.5
1795 Male, age 51, unknown 16.5
Periaquaductal grey, dorsal
nTPM: 20.0
2850 Male, age 76, both hemispheres 21.0
1840 Male, age 53, unknown 19.8
1831 Male, age 72, unknown 19.6
2464 Female, age 72, unknown 19.5
Periaquaductal grey, lateral
nTPM: 20.1
2140 Male, age 76, both hemispheres 20.8
2053 Male, age 18, unknown 20.4
2272 Male, age 74, both hemispheres 19.1
Pretectal area
nTPM: 18.4
2316 Male, age 76, right hemisphere 20.1
2407 Male, age 75, both hemispheres 19.9
2273 Male, age 74, both hemispheres 19.4
1815 Male, age 53, unknown 19.3
1817 Female, age 42, unknown 18.7
2825 Male, age 18, unknown 18.7
2667 Female, age 75, unknown 18.5
2007 Male, age 72, unknown 18.0
2224 Female, age 72, unknown 18.0
1944 Female, age 72, unknown 16.5
1816 Male, age 51, unknown 15.9
Red nucleus
nTPM: 19.3
1954 Female, age 42, unknown 21.9
2227 Male, age 72, unknown 21.6
1865 Male, age 51, unknown 20.8
2823 Male, age 76, right hemisphere 20.7
1904 Male, age 53, unknown 19.8
2725 Female, age 75, unknown 19.3
2503 Female, age 72, unknown 18.4
2584 Male, age 75, left hemisphere 18.4
2588 Male, age 74, left hemisphere 18.2
2769 Male, age 72, unknown 17.8
1821 Female, age 72, unknown 17.7
2785 Male, age 18, unknown 16.5
Substantia nigra
nTPM: 19.4
2409 Female, age 72, unknown 24.1
2699 Male, age 18, unknown 21.7
2665 Male, age 74, both hemispheres 21.0
2241 Male, age 72, unknown 19.7
1889 Female, age 72, unknown 19.3
2583 Male, age 75, right hemisphere 19.1
2590 Female, age 75, unknown 19.0
1851 Male, age 51, unknown 17.8
1916 Female, age 42, unknown 16.8
1941 Male, age 53, unknown 15.7
Superior colliculus
nTPM: 18.3
1839 Male, age 51, unknown 19.7
1913 Female, age 42, unknown 19.5
1995 Male, age 72, unknown 19.4
2087 Female, age 72, unknown 19.4
2664 Male, age 75, both hemispheres 19.1
1895 Male, age 76, right hemisphere 18.5
2587 Male, age 74, left hemisphere 17.7
2668 Female, age 75, unknown 17.2
1796 Male, age 53, unknown 16.3
2261 Male, age 18, unknown 15.9
Ventral tegmental area
nTPM: 18.9
2021 Male, age 53, unknown 20.2
1942 Male, age 51, unknown 20.0
2223 Female, age 72, unknown 19.8
2218 Male, age 76, both hemispheres 19.5
2410 Female, age 72, unknown 18.0
1915 Female, age 42, unknown 16.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 13.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.0
Samples: 139

Max nTPM: 25.9
Min nTPM: 6.7
Std nTPM: 3.2
Median nTPM: 12.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 25.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 20.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 19.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 19.0
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 18.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 18.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 18.7
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 18.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 18.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 18.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 18.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.6
FF:10158-103A5 76 years, female 17.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 6.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 6.2
Samples: 4

Max nTPM: 7.5
Min nTPM: 4.9
Sample A Female 7.2
Sample B Female 5.1
Sample C Male 7.5
Sample D Male 4.9
Midbrain
nTPM: 6.8
Samples: 4

Max nTPM: 7.9
Min nTPM: 5.0
Sample A Female 7.9
Sample B Female 5.0
Sample C Male 7.3
Sample D Male 6.9
Periaqueductal gray
nTPM: 5.5
Samples: 3

Max nTPM: 6.6
Min nTPM: 4.8
Sample B Female 4.8
Sample C Male 6.6
Sample D Male 5.1
Superior colliculi
nTPM: 6.5
Samples: 4

Max nTPM: 7.3
Min nTPM: 5.3
Sample A Female 7.1
Sample B Female 6.4
Sample C Male 7.3
Sample D Male 5.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 7.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.1
Samples: 4

Max nTPM: 8.0
Min nTPM: 6.6
Sample A Male 6.9
Sample B Male 8.0
Sample C Female 7.0
Sample D Female 6.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68795405 Antisense, RP_041116_02_H10, Mouse strain C57BL/6J (56 days, male) 0.1

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