HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:26.8 nTPM
HPA Brain:52.8 nTPM
GTEx:26.8 nTPM
FANTOM5:77.9 Scaled Tags Per Million
Pig:157.0 nTPM
Mouse:78.0 nTPM
Allen mouse:2.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA027158Antibody HPA027209
Glial cells Not detectedNot detected
Neuronal cells LowLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 52.8
Sample id Sample description nTPM
Hippocampus
nTPM: 50.9
1898 Male, age 80, left hemisphere 55.4
1911 Female, age 85, right hemisphere 52.0
1855 Male, age 76, left hemisphere 50.9
2529 Female, age 94, left hemisphere 49.4
2621 Female, age 67, right hemisphere 49.4
2148 Female, age 91, left hemisphere 48.6
Dentate gyrus
nTPM: 48.8
1927 Female, age 91, both hemispheres 55.6
2530 Female, age 94, left hemisphere 51.2
2010 Male, age 76, both hemispheres 50.1
2528 Male, age 74, both hemispheres 46.3
2246 Female, age 85, both hemispheres 44.8
2531 Female, age 67, both hemispheres 44.6
Entorhinal gyrus
nTPM: 45.3
1938 Female, age 85, left hemisphere 54.5
2764 Male, age 80, right hemisphere 48.6
2117 Female, age 91, right hemisphere 46.9
1787 Male, age 76, left hemisphere 42.8
2686 Male, age 75, right hemisphere 42.6
2613 Female, age 94, left hemisphere 36.5
Hippocampus, CA1
nTPM: 52.8
2749 Male, age 80, left hemisphere 58.7
1873 Female, age 85, both hemispheres 58.5
2045 Male, age 76, both hemispheres 55.2
2527 Male, age 74, both hemispheres 49.1
2082 Female, age 91, right hemisphere 42.6
Hippocampus, CA2
nTPM: 49.5
1963 Male, age 80, left hemisphere 60.6
1892 Male, age 76, both hemispheres 53.1
2249 Male, age 74, both hemispheres 47.9
2113 Female, age 91, right hemisphere 46.9
1940 Female, age 85, left hemisphere 45.0
2437 Female, age 94, left hemisphere 43.2
Hippocampus, CA3
nTPM: 45.5
2137 Male, age 80, left hemisphere 52.4
1891 Female, age 85, both hemispheres 51.9
1867 Male, age 76, both hemispheres 48.4
2436 Male, age 74, both hemispheres 44.6
2861 Female, age 67, both hemispheres 39.9
2620 Female, age 94, left hemisphere 35.6
Parahippocampal cortex
nTPM: 47.3
1850 Male, age 80, both hemispheres 60.3
1933 Female, age 85, both hemispheres 53.1
2692 Male, age 74, both hemispheres 48.3
2018 Male, age 76, both hemispheres 46.8
2532 Female, age 72, left hemisphere 46.7
2245 Female, age 91, both hemispheres 46.6
1990 Female, age 91, right hemisphere 44.4
2622 Female, age 67, right hemisphere 43.1
2250 Female, age 67, right hemisphere 41.8
2693 Female, age 94, both hemispheres 41.5
Perirhinal gyrus
nTPM: 50.8
1841 Female, age 85, right hemisphere 56.0
2848 Male, age 76, right hemisphere 52.8
1794 Male, age 80, right hemisphere 51.7
1847 Female, age 91, left hemisphere 51.3
2521 Female, age 94, right hemisphere 42.4
Subiculum
nTPM: 46.5
2042 Male, age 76, both hemispheres 50.3
2438 Female, age 94, left hemisphere 49.2
1977 Female, age 85, both hemispheres 46.6
2729 Female, age 91, right hemisphere 46.4
1901 Male, age 80, both hemispheres 44.2
2619 Male, age 74, both hemispheres 42.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 26.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 26.8
Samples: 197

Max nTPM: 44.6
Min nTPM: 5.6
Std nTPM: 7.5
Median nTPM: 27.7
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 44.6
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 42.7
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 41.1
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 40.9
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 40.2
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 40.1
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 39.4
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 39.0
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 38.7
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 38.7
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 38.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 77.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 77.9
FF:10153-102I9 76 years, female 80.1
FF:10169-103B7 60 years, female 75.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 157.0
Pig sample Sample description nTPM
Subiculum
nTPM: 82.7
Samples: 4

Max nTPM: 107.4
Min nTPM: 72.7
Sample A Female 107.4
Sample B Female 76.8
Sample C Male 73.8
Sample D Male 72.7
Dorsal hippocampus
nTPM: 157.1
Samples: 4

Max nTPM: 201.0
Min nTPM: 120.2
Sample A Female 201.0
Sample B Female 169.3
Sample C Male 120.2
Sample D Male 137.7
Entorhinal cortex
nTPM: 83.3
Samples: 4

Max nTPM: 101.5
Min nTPM: 68.5
Sample A Female 78.4
Sample B Female 101.5
Sample C Male 84.8
Sample D Male 68.5
Ventral hippocampus
nTPM: 131.8
Samples: 4

Max nTPM: 170.0
Min nTPM: 100.7
Sample A Female 170.0
Sample B Female 100.8
Sample C Male 100.7
Sample D Male 155.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 78.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 66.4
Samples: 4

Max nTPM: 70.2
Min nTPM: 63.3
Sample A Male 65.8
Sample B Male 63.3
Sample C Female 66.2
Sample D Female 70.2
Hippocampal formation
nTPM: 78.0
Samples: 4

Max nTPM: 84.0
Min nTPM: 68.2
Sample A Male 84.0
Sample B Male 80.0
Sample C Female 79.8
Sample D Female 68.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.8
69114198 Antisense, RP_050317_01_C06, Mouse strain C57BL/6J (56 days, male) 3.4
69838747 Antisense, RP_050321_03_H07, Mouse strain C57BL/6J (56 days, male) 2.2

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