MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:838.8 nTPM
HPA Brain:890.9 nTPM
GTEx:838.8 nTPM
FANTOM5:4496.6 Scaled Tags Per Million
Pig:467.1 nTPM
Mouse:104.1 nTPM
Allen mouse:3.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 890.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 475.1
1870 Female, age 42, unknown 773.4
2411 Female, age 72, unknown 715.0
2019 Male, age 18, unknown 708.5
1830 Male, age 51, unknown 637.7
1833 Male, age 53, unknown 543.1
2828 Female, age 72, unknown 409.8
2666 Male, age 74, left hemisphere 310.4
1827 Male, age 72, unknown 247.5
2219 Male, age 76, both hemispheres 229.0
2586 Male, age 75, left hemisphere 177.0
Dorsal raphe nucleus
nTPM: 422.1
1828 Male, age 53, unknown 559.1
2750 Male, age 76, both hemispheres 555.7
2047 Male, age 72, unknown 409.0
2016 Female, age 72, unknown 344.1
2298 Female, age 72, unknown 242.5
Inferior colliculus
nTPM: 309.2
1848 Female, age 42, unknown 407.1
1890 Male, age 53, unknown 316.9
2097 Female, age 72, unknown 274.0
2849 Male, age 72, unknown 238.8
Median raphe nucleus
nTPM: 417.6
2220 Male, age 76, midline 417.6
Periaquaductal grey, anterior
nTPM: 178.8
1947 Male, age 18, unknown 242.2
1795 Male, age 51, unknown 185.4
2502 Female, age 75, unknown 108.7
Periaquaductal grey, dorsal
nTPM: 180.7
2464 Female, age 72, unknown 272.3
1831 Male, age 72, unknown 215.0
2850 Male, age 76, both hemispheres 153.9
1840 Male, age 53, unknown 81.4
Periaquaductal grey, lateral
nTPM: 271.3
2272 Male, age 74, both hemispheres 420.1
2053 Male, age 18, unknown 251.2
2140 Male, age 76, both hemispheres 142.6
Pretectal area
nTPM: 295.6
2407 Male, age 75, both hemispheres 540.7
2273 Male, age 74, both hemispheres 412.4
1817 Female, age 42, unknown 409.2
2316 Male, age 76, right hemisphere 347.2
1815 Male, age 53, unknown 340.9
2007 Male, age 72, unknown 293.7
2825 Male, age 18, unknown 244.9
2224 Female, age 72, unknown 233.1
1944 Female, age 72, unknown 192.6
1816 Male, age 51, unknown 122.0
2667 Female, age 75, unknown 114.8
Red nucleus
nTPM: 890.9
1865 Male, age 51, unknown 1374.4
1821 Female, age 72, unknown 1293.9
1954 Female, age 42, unknown 1146.2
1904 Male, age 53, unknown 1120.4
2769 Male, age 72, unknown 996.8
2227 Male, age 72, unknown 963.7
2503 Female, age 72, unknown 828.7
2725 Female, age 75, unknown 828.1
2785 Male, age 18, unknown 739.5
2823 Male, age 76, right hemisphere 661.4
2584 Male, age 75, left hemisphere 416.3
2588 Male, age 74, left hemisphere 321.9
Substantia nigra
nTPM: 556.2
2590 Female, age 75, unknown 1838.2
2409 Female, age 72, unknown 536.7
1889 Female, age 72, unknown 491.5
1851 Male, age 51, unknown 466.4
2583 Male, age 75, right hemisphere 437.0
2699 Male, age 18, unknown 419.2
1941 Male, age 53, unknown 407.8
1916 Female, age 42, unknown 392.2
2241 Male, age 72, unknown 385.4
2665 Male, age 74, both hemispheres 187.9
Superior colliculus
nTPM: 335.8
2587 Male, age 74, left hemisphere 749.4
1913 Female, age 42, unknown 532.0
1995 Male, age 72, unknown 380.0
1839 Male, age 51, unknown 343.2
1895 Male, age 76, right hemisphere 280.4
2668 Female, age 75, unknown 273.0
1796 Male, age 53, unknown 259.0
2087 Female, age 72, unknown 210.2
2261 Male, age 18, unknown 165.8
2664 Male, age 75, both hemispheres 164.6
Ventral tegmental area
nTPM: 512.0
2223 Female, age 72, unknown 793.1
2410 Female, age 72, unknown 703.6
2218 Male, age 76, both hemispheres 443.5
2021 Male, age 53, unknown 398.5
1915 Female, age 42, unknown 397.7
1942 Male, age 51, unknown 335.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 838.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 838.8
Samples: 139

Max nTPM: 4751.0
Min nTPM: 102.3
Std nTPM: 682.9
Median nTPM: 621.4
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 4751.0
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 3191.5
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 3059.3
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 2672.5
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 2615.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 2578.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 2468.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 2245.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 2089.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 2055.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 1824.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 4496.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 4496.6
FF:10158-103A5 76 years, female 4496.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 467.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 406.8
Samples: 4

Max nTPM: 596.8
Min nTPM: 275.6
Sample A Female 447.6
Sample B Female 275.6
Sample C Male 307.3
Sample D Male 596.8
Midbrain
nTPM: 467.2
Samples: 4

Max nTPM: 1016.5
Min nTPM: 163.7
Sample A Female 1016.5
Sample B Female 414.5
Sample C Male 163.7
Sample D Male 273.9
Periaqueductal gray
nTPM: 264.3
Samples: 3

Max nTPM: 381.4
Min nTPM: 176.3
Sample B Female 381.4
Sample C Male 176.3
Sample D Male 235.1
Superior colliculi
nTPM: 356.5
Samples: 4

Max nTPM: 523.8
Min nTPM: 211.0
Sample A Female 523.8
Sample B Female 211.0
Sample C Male 283.6
Sample D Male 407.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 104.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 104.1
Samples: 4

Max nTPM: 124.8
Min nTPM: 92.3
Sample A Male 97.9
Sample B Male 124.8
Sample C Female 101.5
Sample D Female 92.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.9
513488 Antisense, RP_040810_01_H07, Mouse strain C57BL/6J (56 days, male) 4.4
75651180 Antisense, RP_060518_01_C06, Mouse strain C57BL/6J (56 days, male) 3.9
69015350 Antisense, RP_050310_02_G08, Mouse strain C57BL/6J (56 days, male) 3.4
70436740 Antisense, RP_050310_02_G08, Mouse strain C57BL/6J (56 days, male) 3.1

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