MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.2 nTPM
HPA Brain:29.3 nTPM
GTEx:29.2 nTPM
FANTOM5:53.4 Scaled Tags Per Million
Pig:56.0 nTPM
Mouse:164.1 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 29.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.0
1827 Male, age 72, unknown 27.7
2666 Male, age 74, left hemisphere 26.1
2411 Female, age 72, unknown 26.0
1870 Female, age 42, unknown 24.7
2586 Male, age 75, left hemisphere 24.1
2019 Male, age 18, unknown 22.9
1833 Male, age 53, unknown 22.8
1830 Male, age 51, unknown 22.7
2828 Female, age 72, unknown 22.0
2219 Male, age 76, both hemispheres 20.6
Dorsal raphe nucleus
nTPM: 26.3
2047 Male, age 72, unknown 29.9
2750 Male, age 76, both hemispheres 26.2
2298 Female, age 72, unknown 25.6
2016 Female, age 72, unknown 25.3
1828 Male, age 53, unknown 24.5
Inferior colliculus
nTPM: 24.1
2097 Female, age 72, unknown 29.1
1848 Female, age 42, unknown 23.2
1890 Male, age 53, unknown 22.7
2849 Male, age 72, unknown 21.5
Median raphe nucleus
nTPM: 28.9
2220 Male, age 76, midline 28.9
Periaquaductal grey, anterior
nTPM: 28.2
1947 Male, age 18, unknown 31.2
1795 Male, age 51, unknown 27.5
2502 Female, age 75, unknown 26.0
Periaquaductal grey, dorsal
nTPM: 24.9
2850 Male, age 76, both hemispheres 26.8
1831 Male, age 72, unknown 25.4
1840 Male, age 53, unknown 25.3
2464 Female, age 72, unknown 22.3
Periaquaductal grey, lateral
nTPM: 27.1
2053 Male, age 18, unknown 28.5
2272 Male, age 74, both hemispheres 26.5
2140 Male, age 76, both hemispheres 26.3
Pretectal area
nTPM: 28.3
2007 Male, age 72, unknown 32.7
1816 Male, age 51, unknown 32.6
1944 Female, age 72, unknown 32.4
1815 Male, age 53, unknown 31.3
1817 Female, age 42, unknown 28.5
2667 Female, age 75, unknown 28.4
2224 Female, age 72, unknown 27.0
2825 Male, age 18, unknown 26.8
2316 Male, age 76, right hemisphere 25.5
2407 Male, age 75, both hemispheres 23.8
2273 Male, age 74, both hemispheres 22.6
Red nucleus
nTPM: 22.5
1821 Female, age 72, unknown 28.6
2725 Female, age 75, unknown 27.9
2584 Male, age 75, left hemisphere 24.4
2823 Male, age 76, right hemisphere 23.3
1904 Male, age 53, unknown 23.1
2785 Male, age 18, unknown 22.7
1954 Female, age 42, unknown 22.3
1865 Male, age 51, unknown 21.3
2503 Female, age 72, unknown 21.2
2588 Male, age 74, left hemisphere 18.9
2769 Male, age 72, unknown 18.3
2227 Male, age 72, unknown 18.0
Substantia nigra
nTPM: 29.3
2409 Female, age 72, unknown 36.1
2241 Male, age 72, unknown 34.0
1889 Female, age 72, unknown 31.2
1916 Female, age 42, unknown 29.6
1941 Male, age 53, unknown 29.3
1851 Male, age 51, unknown 29.0
2583 Male, age 75, right hemisphere 28.4
2665 Male, age 74, both hemispheres 28.4
2699 Male, age 18, unknown 25.1
2590 Female, age 75, unknown 22.0
Superior colliculus
nTPM: 25.1
2668 Female, age 75, unknown 28.3
2261 Male, age 18, unknown 26.7
2087 Female, age 72, unknown 25.9
1913 Female, age 42, unknown 25.7
1796 Male, age 53, unknown 25.1
1895 Male, age 76, right hemisphere 24.4
1839 Male, age 51, unknown 24.3
2664 Male, age 75, both hemispheres 24.3
2587 Male, age 74, left hemisphere 23.8
1995 Male, age 72, unknown 22.9
Ventral tegmental area
nTPM: 25.6
1915 Female, age 42, unknown 26.5
2410 Female, age 72, unknown 26.2
1942 Male, age 51, unknown 25.7
2021 Male, age 53, unknown 25.6
2218 Male, age 76, both hemispheres 25.4
2223 Female, age 72, unknown 24.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 29.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.2
Samples: 139

Max nTPM: 62.5
Min nTPM: 14.9
Std nTPM: 8.0
Median nTPM: 28.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 62.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 58.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 52.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 52.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 51.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 49.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 44.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 43.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 43.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 42.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 40.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 53.4
FF:10158-103A5 76 years, female 53.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 56.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 53.9
Samples: 4

Max nTPM: 66.2
Min nTPM: 44.3
Sample A Female 66.2
Sample B Female 50.8
Sample C Male 54.4
Sample D Male 44.3
Midbrain
nTPM: 56.0
Samples: 4

Max nTPM: 58.1
Min nTPM: 54.3
Sample A Female 56.0
Sample B Female 58.1
Sample C Male 54.3
Sample D Male 55.5
Periaqueductal gray
nTPM: 44.3
Samples: 3

Max nTPM: 47.4
Min nTPM: 41.2
Sample B Female 41.2
Sample C Male 47.4
Sample D Male 44.4
Superior colliculi
nTPM: 49.9
Samples: 4

Max nTPM: 58.1
Min nTPM: 42.7
Sample A Female 58.1
Sample B Female 42.7
Sample C Male 48.9
Sample D Male 49.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 164.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 164.1
Samples: 4

Max nTPM: 173.0
Min nTPM: 154.0
Sample A Male 173.0
Sample B Male 154.0
Sample C Female 159.6
Sample D Female 169.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
70194498 Antisense, RP_050517_01_E06, Mouse strain C57BL/6J (56 days, male) 1.3
74750009 Antisense, RP_060220_04_F11, Mouse strain C57BL/6J (56 days, male) 0.5

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