MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:93.9 nTPM
HPA Brain:76.0 nTPM
GTEx:93.9 nTPM
FANTOM5:48.0 Scaled Tags Per Million
Pig:47.8 nTPM
Mouse:68.9 nTPM
Allen mouse:10.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 76.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 73.1
2586 Male, age 75, left hemisphere 113.7
2019 Male, age 18, unknown 94.6
2828 Female, age 72, unknown 72.9
1870 Female, age 42, unknown 68.1
1830 Male, age 51, unknown 67.5
2666 Male, age 74, left hemisphere 66.5
2411 Female, age 72, unknown 64.2
1833 Male, age 53, unknown 62.1
1827 Male, age 72, unknown 61.2
2219 Male, age 76, both hemispheres 60.1
Dorsal raphe nucleus
nTPM: 76.0
2047 Male, age 72, unknown 101.8
2750 Male, age 76, both hemispheres 88.5
2016 Female, age 72, unknown 74.4
1828 Male, age 53, unknown 66.6
2298 Female, age 72, unknown 48.8
Inferior colliculus
nTPM: 74.0
1890 Male, age 53, unknown 82.4
2849 Male, age 72, unknown 78.4
2097 Female, age 72, unknown 67.9
1848 Female, age 42, unknown 67.1
Median raphe nucleus
nTPM: 53.9
2220 Male, age 76, midline 53.9
Periaquaductal grey, anterior
nTPM: 66.3
1795 Male, age 51, unknown 67.8
2502 Female, age 75, unknown 66.6
1947 Male, age 18, unknown 64.6
Periaquaductal grey, dorsal
nTPM: 55.8
2464 Female, age 72, unknown 64.7
1840 Male, age 53, unknown 61.4
2850 Male, age 76, both hemispheres 51.2
1831 Male, age 72, unknown 45.8
Periaquaductal grey, lateral
nTPM: 57.8
2140 Male, age 76, both hemispheres 66.7
2272 Male, age 74, both hemispheres 59.3
2053 Male, age 18, unknown 47.6
Pretectal area
nTPM: 63.1
2007 Male, age 72, unknown 94.5
2316 Male, age 76, right hemisphere 75.3
2407 Male, age 75, both hemispheres 67.2
1817 Female, age 42, unknown 64.5
1944 Female, age 72, unknown 61.9
2273 Male, age 74, both hemispheres 58.2
2224 Female, age 72, unknown 56.9
2825 Male, age 18, unknown 56.1
1816 Male, age 51, unknown 55.1
2667 Female, age 75, unknown 52.8
1815 Male, age 53, unknown 51.9
Red nucleus
nTPM: 67.4
2785 Male, age 18, unknown 91.5
2588 Male, age 74, left hemisphere 85.7
2769 Male, age 72, unknown 84.8
2227 Male, age 72, unknown 77.3
2584 Male, age 75, left hemisphere 74.3
2503 Female, age 72, unknown 62.3
1954 Female, age 42, unknown 61.1
1904 Male, age 53, unknown 60.4
2823 Male, age 76, right hemisphere 59.5
1865 Male, age 51, unknown 57.0
1821 Female, age 72, unknown 47.9
2725 Female, age 75, unknown 46.8
Substantia nigra
nTPM: 66.2
1941 Male, age 53, unknown 106.0
1916 Female, age 42, unknown 96.8
2583 Male, age 75, right hemisphere 71.7
1889 Female, age 72, unknown 67.7
2590 Female, age 75, unknown 66.7
1851 Male, age 51, unknown 63.7
2665 Male, age 74, both hemispheres 62.7
2699 Male, age 18, unknown 44.2
2409 Female, age 72, unknown 42.7
2241 Male, age 72, unknown 39.8
Superior colliculus
nTPM: 66.2
2668 Female, age 75, unknown 100.4
1895 Male, age 76, right hemisphere 78.9
2664 Male, age 75, both hemispheres 73.6
2587 Male, age 74, left hemisphere 69.3
1839 Male, age 51, unknown 68.8
2261 Male, age 18, unknown 68.5
1796 Male, age 53, unknown 57.5
1913 Female, age 42, unknown 52.1
2087 Female, age 72, unknown 50.3
1995 Male, age 72, unknown 42.4
Ventral tegmental area
nTPM: 64.3
1942 Male, age 51, unknown 79.7
1915 Female, age 42, unknown 75.3
2410 Female, age 72, unknown 59.3
2223 Female, age 72, unknown 58.1
2218 Male, age 76, both hemispheres 56.9
2021 Male, age 53, unknown 56.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 93.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 93.9
Samples: 139

Max nTPM: 267.0
Min nTPM: 34.9
Std nTPM: 32.7
Median nTPM: 85.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 267.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 193.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 165.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 164.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 159.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 157.6
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 156.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 153.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 141.0
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 136.5
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 133.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 48.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 48.0
FF:10158-103A5 76 years, female 48.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 47.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 36.0
Samples: 4

Max nTPM: 53.0
Min nTPM: 24.0
Sample A Female 53.0
Sample B Female 24.0
Sample C Male 42.4
Sample D Male 24.7
Midbrain
nTPM: 39.7
Samples: 4

Max nTPM: 51.4
Min nTPM: 28.5
Sample A Female 28.5
Sample B Female 30.5
Sample C Male 51.4
Sample D Male 48.5
Periaqueductal gray
nTPM: 32.9
Samples: 3

Max nTPM: 38.9
Min nTPM: 29.2
Sample B Female 30.7
Sample C Male 38.9
Sample D Male 29.2
Superior colliculi
nTPM: 47.8
Samples: 4

Max nTPM: 64.3
Min nTPM: 23.9
Sample A Female 54.1
Sample B Female 23.9
Sample C Male 64.3
Sample D Male 48.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 68.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 68.9
Samples: 4

Max nTPM: 74.6
Min nTPM: 62.8
Sample A Male 74.6
Sample B Male 65.3
Sample C Female 72.9
Sample D Female 62.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.8
74658111 Antisense, RP_060220_02_C07, Mouse strain C57BL/6J (56 days, male) 14.6
671251 Antisense, RP_040914_02_B10, Mouse strain C57BL/6J (56 days, male) 7.0

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